Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00178 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCTCAAAGATCTGAGAGAGTGAAATCTGTGGATCTACATCCTACAGAACCATGGATTTTGGCAAGTTTATACAGTGGCACTGTCTGCATATGGAACTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTAGCTGAATTACCAGTTAGGTCGGCTAAGTTTATTGCACGTAAACAGTGGGTTGTTGCCGGAGCAGATGATATGCATATTCGTGTATATAATTACAACACAATGGATAAGGTTAAAATATTTGAGGCACACACAGATTACATTAGGTGTGTGGCAGTACATCCTAACCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGACAAGGGCTGGGTTTGTACCCAGGTATTTGAGGGGCATTCTCATTATGTCATGCAAGTGACATTTAACCCTAAAGATACCAACACCTTCGCAAGTGCCTCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCAGACCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTAATAACTGGATCTGATGATCACACTGCAAAGGTATGGGATTATCAGACTAAAAGTTGTGTCCAGACTTTGGAGGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAGCTCCCTATAATTATTACTGGTTCTGAGGATGGTACAGTACGAATATGGCATTCCACAACGTATAGGGTTGTGATTGGATACGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCAGTGGCCAGCATGGATAACAGCGGGAAGATTATCTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAGAAGTGTAGGAGCAGACACACAGATTGCTGATGGGGAAAGGTTACCTTTGGCTGTTAAGGAGCTTGGGACATGTGATCTCTACCCACAAAGCTTGAAACACAATCCAAATGGTCGGTTTGTTGTTGTTTGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGATCGTTTGGCTCGGCATTGGAATTCGTCTGGTCTTCGGATGGGGAGTATGCTGTGAGAGAAAGTACATCAAAAATTAAGATTTTCAGCAAGAATTTCCAGGAAAAGAAGAGTATCCGGCCAACATTTTCAGCTGAACGAATATTTGGTGGCACTGTACTGGCAATGTGCTCAAATGATTTCATTTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGGATTGATGTTAATGTGAAAAACCTCTATTGGGCTGATAGTGGTGATCTAGTGGTGATTGCAAGTGACACATCATTCTACATCTTGAAGTACAACCGTGATGTTGTTGCATCATATCTTGACAGTAAAACGGCCGTTGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTCCATGAAATGAATGAGCGTGTGAGAACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGAGAGGTGACTACAATGTCTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTTTACTTGATAGACAAAGAGTTCAATGTAATGGGATACACACTACTTTTGAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACTTGGATAGGGCCAATGAAGTTCTACCATCCATTCCTAAAGAGCATCACAACAGTGTGGCTCGATTCCTGGAATCACGAGGCATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTATAGGTTCGATCTAGCCATGCAGCTTGGGAGATTAGAGGTTGCAAAGAGCATTGCCACGGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTCTAAAGCATGCAATGGATTTGAGTGGGTTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATTTCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTACACTGGGTAAACTTGAAGATTGCCTTCAACTGTTGATAGAAAGCAACCGGATTCCTGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAGGTGTCAGAGATAGTGGCAATTTGGCGAAAAGATCTGAACAAGGTTAGTCCAAAAGCTGCGGAATCATTGGCTGATCCTGAAGAGGGCGTTTATCCTCCTGCAGAGGAGTACATCAACCATGCTGATAAATCACACATACCTCTTGTTGAAGCTTTCAGAAACATGCAGATCGAAGAAGAGGAACAGCCTCTAGAGAATGGGGAATCCTACCATGAGTTGGCCGAACAAAACGAAGAGGAATATACAGAGGAACAAAATGCAGAGGAAGGAAGCCAAGAGGAAGTTGTAGTGGATGCAGATTCTACCGATGGTGCAGTCCTCGTTAATGGTACCGAGGCTAAGGAAGAGTATGAAACCCCATCGACATAA 2598 0.4269 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVAELPVRSAKFIARKQWVVAGADDMHIRVYNYNTMDKVKIFEAHTDYIRCVAVHPNLPYVLSSSDDMLIKLWDWDKGWVCTQVFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADTQIADGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVVIASDTSFYILKYNRDVVASYLDSKTAVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMSHLDRPMYLLGYLASQSKVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLDRANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAMQLGRLEVAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFTLGKLEDCLQLLIESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVSPKAAESLADPEEGVYPPAEEYINHADKSHIPLVEAFRNMQIEEEEQPLENGESYHELAEQNEEEYTEEQNAEEGSQEEVVVDADSTDGAVLVNGTEAKEEYETPST 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00178 865 Coils Coil 817 837 - -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Adu09g00178 865 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Adu09g00178 865 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Adu09g00178 865 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Adu09g00178 865 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 46 85 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 174 215 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 131 171 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 4 43 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 218 257 IPR001680 GO:0005515
Adu09g00178 865 SMART WD40_4 88 127 IPR001680 GO:0005515
Adu09g00178 865 PANTHER COATOMER 1 827 - -
Adu09g00178 865 MobiDBLite consensus disorder prediction 804 865 - -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Adu09g00178 865 Pfam Coatomer WD associated region 296 740 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Adu09g00178 865 MobiDBLite consensus disorder prediction 820 839 - -
Adu09g00178 865 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Adu09g00178 865 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Adu09g00178 865 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Adu09g00178 865 PIRSF Beta'-COP 262 857 IPR016453 -
Adu09g00178 865 PIRSF Beta'-COP 2 264 IPR016453 -
Adu09g00178 865 MobiDBLite consensus disorder prediction 804 819 - -
Adu09g00178 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Adu09g00178 865 Gene3D - 11 292 IPR015943 GO:0005515
Adu09g00178 865 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 202 471 IPR011044 -
Adu09g00178 865 CDD WD40 17 264 - -
Adu09g00178 865 SUPERFAMILY WD40 repeat-like 3 354 IPR036322 GO:0005515
Adu09g00178 865 Gene3D - 567 775 - -
Adu09g00178 865 PANTHER COATOMER SUBUNIT BETA' 1 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00178 Adu-Chr9 1947893 1957130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00178 15 344 Miscellaneous Gene Families AT5G08390 19.391 2.33e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00178 K17302 - gmx:100797508 1597.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g00178 09 1947893 1957130 Adu09g00178 09 1947893 1957130 ECH
Adu07g02481 07 78995227 79005841 Adu09g00178 09 1947893 1957130 PCT