Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01101 ATGAAGAACAGCAACGACGACGACAATAAGCAGCAAAACGAAGACTCTGCTGCCTCCGTAGATTCCCGATTCAACCAGACTCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAGATATTACTAAGCCAGAGGGTAGACCTGCCAGATACCCCAAATTCATACTCGCCGCCTTCTTATGAAAGGAGCTCACCATTAAGTGATACCGGCACAAGTGATCACACACCTGAGACACTAGAGGAGGAAGTTCGTAGTACAAGTAAACCAATTGCTTCTCCTAATGAGAATGTGTTAAAATTATCAACTTTACGCATAGAGAACCCGTCTGAAGAAGTGCGGAAATCTTCCGTGAGTACTAGAGCTACGGATTCTGCAAGAGTGATGAAATTCAATAAGGTGCTTTCCGGGACAATGGTTATATTAGATAAGTTGCGTGAGTTAGCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTATGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGATGGGGTTTTGAGGAGGAAGCGCCTAGAGTATCTTGATTGTGTTTCGCAGTATTATGATATTCCTGAGACAGTTCGCTCAGATGATGAGATCAACATGCTCCGCCAGATTGCGGTAGATTGTCCTAGGACCGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTCCAGAAGTCACTCGAGCGTATTCTTTACACATGGGCTATTCGACATCCTGCCAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTCTAGTCGTTTTCCTATCAGAACACTTGCAAGGGGGTATCGATAATTGGTCAATGTCTGATCTATCTGCAGAGAAAATTTCTAATATAGAGGCTGATTGCTATTGGTGCTTGTCAAAATTACTGGATGGTATGCAAGACCATTACACGTTTGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCAAACCACATGGAGCTTCAGGGACTAGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGCCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACACGCCTCTGGGACACGTATCTAGCCGAAGGAGATGCCTTACCAGATTTTCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGACAAGCTAAAGAAGCTTGATTTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAGAACTGGTCTCACCAGGAGCTCGAGATGGTGCTTTCCCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCCACTTGA 1359 0.4437 MKNSNDDDNKQQNEDSAASVDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDLPDTPNSYSPPSYERSSPLSDTGTSDHTPETLEEEVRSTSKPIASPNENVLKLSTLRIENPSEEVRKSSVSTRATDSARVMKFNKVLSGTMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRRDGVLRRKRLEYLDCVSQYYDIPETVRSDDEINMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEHLQGGIDNWSMSDLSAEKISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSNHMELQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLKKLDFQELVMFLQHLPTQNWSHQELEMVLSRAFMWHSMFNNSPSHLAT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01101 452 Gene3D - 317 452 - -
Adu08g01101 452 SMART tbc_4 152 408 IPR000195 -
Adu08g01101 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 316 - -
Adu08g01101 452 MobiDBLite consensus disorder prediction 51 77 - -
Adu08g01101 452 Gene3D - 130 180 - -
Adu08g01101 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 449 - -
Adu08g01101 452 MobiDBLite consensus disorder prediction 1 24 - -
Adu08g01101 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
Adu08g01101 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Adu08g01101 452 MobiDBLite consensus disorder prediction 47 98 - -
Adu08g01101 452 Pfam Rab-GTPase-TBC domain 159 403 IPR000195 -
Adu08g01101 452 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 5 449 - -
Adu08g01101 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 342 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01101 Adu-Chr8 19853769 19857632 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01101 K20360 - gmx:100785695 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01101 08 19853769 19857632 Adu08g01101 08 19853769 19857632 ECH
Adu08g01101 08 19853769 19857632 Adu03g00401 03 3737169 3741175 PCT