Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00401 ATGAGCAACCACCATAACCAACAAGATCAGCGTAACGGCATTCTCGATTCCACCTTCAATCAAACCCTTAGAACTGTTCAAGGGTTACTTAAAGGTCGTAGCATGCCTGGGAAAATATTATTGAGCCCGAGATCAGACCCAGTAGATGGCTCGAACACGAAGGACTCATCGCCAAGTTACAGGAGGAGCTTCTCACACAATGATGCTGGCACTAGTGACCATACATATGGGGCAGATGAGGAAGAAGTTCAGAGTCCAACTATTATTGCCAATTTGAATCGGTTATCAATCTCGCATGTAGAGAGATCATCCAAAGAATTCTCCAAGTCTACCATTGGTGCCAGATCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTTCTTTCAGGGACAACAGTTATATTAGACAAGTTGCGTGAGCTAGCCTGGAGTGGTGTTCCAGATGACATGCGCCCTACTGTGTGGAGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGGGTTCTACGAAGAAAGCGCCTTGAGTATCTTGAGTGTATTTCTCAGTATTATGATATTCCTGATACTGATCGTTCCGATGATGAGATCAACATGCGTCGCCAGATTGTTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAGCGCATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTAGTTGTTTTCCTTTCAGAATACTTAGAAGGGTCTATAGATAATTGGTCAATGTCTGATTTATCCTCAGACCAGATCAACAATGTAGAGGCTGATTGCTATTGGTGCTTGTCGAAGTTGCTTGATGGTATGCAAGATCATTACACATTTGCTCAACCAGGGATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAACCTGTTTCACGACATGTGGAGGATCAAGGTCTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACGTACCTTGCTGAAGGAGATGCTTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTCCTTCTAACATGGTCAGACAATCTCCAGAAGCTAGATTTCCAAGAATTGGTGATATTCCTTCAACATCTTCCAACTCAGAACTGGACTCACCAAGAGCTGGAAATGGTACTTTCCAGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCCAGCCATTTAGCCAGCTGA 1332 0.4354 MSNHHNQQDQRNGILDSTFNQTLRTVQGLLKGRSMPGKILLSPRSDPVDGSNTKDSSPSYRRSFSHNDAGTSDHTYGADEEEVQSPTIIANLNRLSISHVERSSKEFSKSTIGARSTDSARVMKFTKVLSGTTVILDKLRELAWSGVPDDMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLECISQYYDIPDTDRSDDEINMRRQIVVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDQINNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDNLQKLDFQELVIFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00401 443 ProSiteProfiles TBC/rab GAP domain profile. 146 373 IPR000195 -
Adu03g00401 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 309 431 IPR035969 -
Adu03g00401 443 MobiDBLite consensus disorder prediction 34 82 - -
Adu03g00401 443 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 182 307 - -
Adu03g00401 443 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 440 - -
Adu03g00401 443 MobiDBLite consensus disorder prediction 46 72 - -
Adu03g00401 443 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 5 440 - -
Adu03g00401 443 Pfam Rab-GTPase-TBC domain 149 391 IPR000195 -
Adu03g00401 443 Gene3D - 308 443 - -
Adu03g00401 443 SMART tbc_4 143 399 IPR000195 -
Adu03g00401 443 Gene3D - 123 174 - -
Adu03g00401 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 124 333 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00401 Adu-Chr3 3737169 3741175 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00401 K20360 - gmx:100819281 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01101 08 19853769 19857632 Adu03g00401 03 3737169 3741175 PCT