Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01088 ATGTTTTCAGGGGTAGCCGGAATGCTCAACCGTGGCCACAAGATCAAAGGGACTGTGGTCTTGATGCGCAAGAATGTCCTGGACGTTGACACCTTTACTGATGTTGTTGCCACCGCCAACATCGGAGGCCTCATTGGCACCGGCATCAACGTCATTGGCTCCACCGTTGACGCCCTCACCGCCTTCTTAGGCCGCAGTGTCTCCCTCCAGCTCATCAGTTCTACTCAATCCGATGAGAATGGCAACGGAAAAGTTGTAAAGGATACATTTCTGGAAGGTATTATTGCGTCGTTACCAACCTTAGGAGCTGGAGAATCTGCATTCAGCATTCATTTTGAATGGGACGATAGCATGGGAATCCCTGGTGCATTTTACATCAAGAACTATATGCAAGTTGAGTTTTTCCTCAAGACCTTAACTCTTGAAGATGTTCCAAACCAAGGAACCATCCATTTTGTTTGCAACTCTTGGGTTTACAACTCTAAACTCTACAAATCCCCACGCATTTTCTTCTCCAACAAGCCATATCTTCCAAGTGAAACACCAGCTCCACTTGTTAAGTACAGAGAAGAAGACCTGAAAAATTTAAGAGGTGATGGAAAAGGAGAGCGTCAGGAGCATGAAAGAATTTATGATTATGATGTCTACAATGATTTGGGGAATCCGGATCGGAACGAAAACCATGCTTGCCCCATTCTTGGAGGTTCTACCACTTTCCCTTACCCTCGCAGGGGAAGAACTGGTAGATATCCTGCAAGAAATGATCCTAACAGCGAGAAACCAGGGGATGTTTATGTTCCTAGAGATGAAAACTTTGGACACTTGAAATCTTCGGACTTTCTTGCAAATTCAATAAAAGTTTTTGACTCGGTATGCGGAATTAGGCTACCTACGGAAGTAATTAGCACAATTAGCCCCTTACCTGTCATCAAAGAACTCTTCCGTACCGATGGCGAACAAGTCCTCAAGTTTCCACCACCTCACATCATTCAAGCAGTGAATAAATCTGCATGGATGACTGATGAAGAATTCGCAAGAGAAATGATTGCTGGTGTAAATCCTTGCATGATTCGTAGTCTTCAAGAGTTTCCTCCCAAAAGCACTTTGGATCCCACAATCTATGGTGATCAAAACAGTAAGATAACTGCAGAAGTTCTTGATCTTGAAGGGTGCTCACTAGAAGAGGCAATTAATGGTCGGAGACTGTTTATATTAGATTACCATGATGTGTTCATGCCATATGTGAGGCGAATAAATGAGACCCATGCAAAAGCATATGCCACTAGGACTATCCTTTTTCTGAAAGAGGATGGAACATTGAAGCCAGTGGCCATTGAATTAAGCTTGCCACATCCTGATGGAGATAAATCAGGTGCTATCAGTGAAGTTATCTTACCTGCAAAGGAAGGTGTTGAAAGCACAATTTGGCTACTAGCCAAAGCTTATGTCATAGTAAATGACTCATGCTACCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTTATTGAGCCATTTGTGATAGCAACAAATAGACAGCTAAGTGTGATTCACCCAATTTATAAACTTTTATCTCCACACTACCGTGACACTATGAACATCAATGCACTTGCAAGGCAGAATCTGATTAATTCTGATGGCATAATAGAAAGAACTTTCTTGCCCTCCAAGTTTTCTCTGGAGATGTCTTCAGCTGTTTATAAGAACTGGGTTTTCACTGATCAAGCACTACCTGCTGATCTCATCAAGAGAGGAATGGCAGTGGAGGATTCATCTTCTCCTTATGGAATTCGTCTTGTAATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGTTTGCCATTAAGACATGGGTCCAAGATTATGTCTCATTGTACTATCCAACAGACAATGATCTCAGAAAAGACCCTGAACTCCAAAATTGGTGGAAAGAAGCTGTTGAGGTAGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAGACAGTTGAAGAGTTAGTTGAATCATGCACAACCATAATATGGACCGCGTCGGCGCTCCATGCAGCCGTTAATTTTGGACAGTATCCATATGGAGGGCTTATACTGAACCGTCCAACACTTAGCAGAAGATTGCTTCCTGAACAAGGCACTGCAGAGTATGAAGAGATGGTGAAGAGTCACCAAAAGGCTTATCTGAGAACAATTACACCGAAATTGGAGACTCTTATTGACCTTACAACCATAGAAATCTTATCAAAGCATGCTTCTGATGAGGTGTATCTTGGAGAGAGGGATAATCCACATTGGACATTTGATTCAAGAGCATTACAAGCATTTCAGAGATTTGGGAACAAACTGAGTGAGATTGAGGAGAAGCTAACAGAGAAGAACAAAGATGGGAGACTGAGTAATAGAATTGGGCCAGTTGAATTGCCATACACTCTGCTTCATCCTACTAGCAATGAAGGGTTGACTTTTAGAGGAGTTCCAAACAGCATCTCTATCTAA 2508 0.4242 MFSGVAGMLNRGHKIKGTVVLMRKNVLDVDTFTDVVATANIGGLIGTGINVIGSTVDALTAFLGRSVSLQLISSTQSDENGNGKVVKDTFLEGIIASLPTLGAGESAFSIHFEWDDSMGIPGAFYIKNYMQVEFFLKTLTLEDVPNQGTIHFVCNSWVYNSKLYKSPRIFFSNKPYLPSETPAPLVKYREEDLKNLRGDGKGERQEHERIYDYDVYNDLGNPDRNENHACPILGGSTTFPYPRRGRTGRYPARNDPNSEKPGDVYVPRDENFGHLKSSDFLANSIKVFDSVCGIRLPTEVISTISPLPVIKELFRTDGEQVLKFPPPHIIQAVNKSAWMTDEEFAREMIAGVNPCMIRSLQEFPPKSTLDPTIYGDQNSKITAEVLDLEGCSLEEAINGRRLFILDYHDVFMPYVRRINETHAKAYATRTILFLKEDGTLKPVAIELSLPHPDGDKSGAISEVILPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVIHPIYKLLSPHYRDTMNINALARQNLINSDGIIERTFLPSKFSLEMSSAVYKNWVFTDQALPADLIKRGMAVEDSSSPYGIRLVIEDYPYAVDGLEIWFAIKTWVQDYVSLYYPTDNDLRKDPELQNWWKEAVEVGHGDLKDKPWWPKMQTVEELVESCTTIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEQGTAEYEEMVKSHQKAYLRTITPKLETLIDLTTIEILSKHASDEVYLGERDNPHWTFDSRALQAFQRFGNKLSEIEEKLTEKNKDGRLSNRIGPVELPYTLLHPTSNEGLTFRGVPNSISI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01088 835 Pfam Lipoxygenase 185 288 IPR013819 GO:0016702|GO:0046872
Adu08g01088 835 Pfam Lipoxygenase 302 818 IPR013819 GO:0016702|GO:0046872
Adu08g01088 835 PANTHER LIPOXYGENASE 1 288 IPR000907 GO:0016702|GO:0046872
Adu08g01088 835 ProSitePatterns Lipoxygenases iron-binding region signature 1. 491 505 IPR020833 GO:0016702|GO:0046872
Adu08g01088 835 Gene3D PLAT/LH2 domain 4 176 - -
Adu08g01088 835 Pfam PLAT/LH2 domain 81 171 IPR001024 GO:0005515
Adu08g01088 835 ProSitePatterns Lipoxygenases iron-binding region signature 2. 518 528 IPR020834 GO:0016702|GO:0046872
Adu08g01088 835 SUPERFAMILY Lipoxigenase 177 835 IPR036226 -
Adu08g01088 835 Gene3D - 336 468 - -
Adu08g01088 835 Gene3D - 177 275 - -
Adu08g01088 835 PRINTS Lipoxygenase signature 491 508 IPR013819 GO:0016702|GO:0046872
Adu08g01088 835 PRINTS Lipoxygenase signature 473 490 IPR013819 GO:0016702|GO:0046872
Adu08g01088 835 PRINTS Lipoxygenase signature 511 531 IPR013819 GO:0016702|GO:0046872
Adu08g01088 835 ProSiteProfiles PLAT domain profile. 47 172 IPR001024 GO:0005515
Adu08g01088 835 PRINTS Plant lipoxygenase signature 426 450 IPR001246 GO:0016491
Adu08g01088 835 PRINTS Plant lipoxygenase signature 142 160 IPR001246 GO:0016491
Adu08g01088 835 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Adu08g01088 835 PRINTS Plant lipoxygenase signature 748 762 IPR001246 GO:0016491
Adu08g01088 835 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Adu08g01088 835 MobiDBLite consensus disorder prediction 243 264 - -
Adu08g01088 835 Gene3D - 279 333 IPR027433 -
Adu08g01088 835 PANTHER LIPOXYGENASE 292 835 IPR000907 GO:0016702|GO:0046872
Adu08g01088 835 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 176 IPR036392 GO:0005515
Adu08g01088 835 SMART LH2_4 13 173 IPR001024 GO:0005515
Adu08g01088 835 CDD PLAT_LH2 13 173 IPR042057 -
Adu08g01088 835 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 292 835 - -
Adu08g01088 835 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 288 - -
Adu08g01088 835 Gene3D - 469 834 - -
Adu08g01088 835 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 835 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01088 Adu-Chr8 19645357 19648852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01088 1 835 Acyl Lipid Metabolism Gene Families AT1G55020 55.153 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01088 K15718 - gmx:547774 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01088 08 19645357 19648852 Adu09g00863 09 13237820 13244455 PCT