Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00210 ATGGACATTTCAGAAGTTATGAACATTCCTGACTATACAAGAATTCTATTTGATAAGCTTCAGAAGTTTGAGCCTGAATATGCTTCAAAGATAATTGGAATTCTGCTTTTGCACAATGAACATGACATTGCTAAATTGGCCACATGTCCGGACCACATCGTCCGTGACGTGGCATTCAAGGCCAAGAATGATCTTCAAAGAATGTCTGCTCATAAACCATCCATAATTCCAATTTCAGTCCCTATGAACCCTCCACAAGGATTAAGCCATTTATCAGTAATATCACCTAGAACACCTACCTCTCCACCAAGCTTTCCGGTTCACAATTCTCCTTATTGGGATCCATATCCTGCTACCAATACTAACCCAGAGTTTATGAAGTACTCGGATTCGATTGCGGAACTGCAGAATCAGGCAGAGTTGTATGGTTTGGAGAGTCATGTAGATCCCATTGGCAGTGATTTCTATGGATTGGAAGCTTCGACGCCGAATTTCGGTGGAAAGGCCGGTAAAAGGTATTCAGGCTTGTCTGATTTTCCTGTTAAGACCTGTCACTACTTTAACAAAGGTTATTGTAAACATGGTGAAAGCTGTAGATACTATCATGGACAAGCCGGCTCCGAGAGCTTCTCTCATATGTATGGAAATGATTTTGTTAATGATGATCCGGTGGTTTCGCCGGGCTCACTAGCGCAGCTAGAACGTGAGATTGTTGATCTGTTAAAGCAAAGAAGACGCAATCCAATTACAATTGCTGCCTTGCCAATGGCATATTATGATAAGTACAAGAAGGTGCTTCAGGCAGATGGTTATTTAACCGAGAGCCAGCGGCATGGTAAGTCTGGCTATAGCTTGACAAAGCTTCTGGCGCGGCTGAGCAATAGTATTTGTGTCATAGACAGACCTCATGGGCAGCATGAGGTAGTTCTAGCAGAGGATGCTCCAAAATACACACAGAAGAGAGATTTTGTTCAAAATATCAGTGCATCGCGACAAATATATTTGACATTTCCGGCTGACAGCACTTTCACAGAGGAGGATGTCTCTAATTACTTCAGCACATTCGGGTGTGTTGAAGATGTAAGGATTCCATGCCAGCAGAAAAGGATGTTTGGCTTTGTGACGTTTATTGATCCGCAAACTGTTAAAACTATTTTAGACAAAGGGAATCCCCATTATGTTCGTGGGTCTCGGGTGCTTGTGAAACCTTACCGGGAGAAGTCAAAGGTTATTGAAAGGAAGTATGCTGATAGAATTCAGCACTCTATGTGTTACTCACCTCACCACGTAGACATGGATTCTGAAATGAACTCAATTTCAAGAAGTTGTGGGAATGCTAGATCTCTTAGGAGACAACTGATGGAAGAGCAGGAGCAGGCTCTAGAACTAGTAGAAATGCAAAGGAGACGTTTGGCAGCGTTGCAGTTTGCCCAAAATTCTCTGTCTACTTCACCCCAGTTTCGCTTCTCCACGAATGGAATGAGAGCTTCAGAAGATCATTTCAATTTCAACTTTCATCCTCAAGAATCTTTCAATGATAATGAGAAACCAAGTAATATAGACACCAATTTCTCGGATGAAAACAGCAGCAGCCAAGGGCTTGACCTTCCGGACAGTCCATTCGCATTTCCGGTGGAGAATGAGAATCAATAA 1653 0.4253 MDISEVMNIPDYTRILFDKLQKFEPEYASKIIGILLLHNEHDIAKLATCPDHIVRDVAFKAKNDLQRMSAHKPSIIPISVPMNPPQGLSHLSVISPRTPTSPPSFPVHNSPYWDPYPATNTNPEFMKYSDSIAELQNQAELYGLESHVDPIGSDFYGLEASTPNFGGKAGKRYSGLSDFPVKTCHYFNKGYCKHGESCRYYHGQAGSESFSHMYGNDFVNDDPVVSPGSLAQLEREIVDLLKQRRRNPITIAALPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLSNSICVIDRPHGQHEVVLAEDAPKYTQKRDFVQNISASRQIYLTFPADSTFTEEDVSNYFSTFGCVEDVRIPCQQKRMFGFVTFIDPQTVKTILDKGNPHYVRGSRVLVKPYREKSKVIERKYADRIQHSMCYSPHHVDMDSEMNSISRSCGNARSLRRQLMEEQEQALELVEMQRRRLAALQFAQNSLSTSPQFRFSTNGMRASEDHFNFNFHPQESFNDNEKPSNIDTNFSDENSSSQGLDLPDSPFAFPVENENQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00210 550 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 7 547 - -
Adu07g00210 550 Gene3D - 177 260 - -
Adu07g00210 550 ProSiteProfiles Zinc finger C3H1-type profile. 178 205 IPR000571 GO:0046872
Adu07g00210 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 418 IPR000504 GO:0003723
Adu07g00210 550 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 7 547 - -
Adu07g00210 550 MobiDBLite consensus disorder prediction 504 536 - -
Adu07g00210 550 CDD RRM_AtC3H46_like 333 402 IPR034365 -
Adu07g00210 550 SUPERFAMILY RNA-binding domain, RBD 341 413 IPR035979 GO:0003676
Adu07g00210 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 204 IPR000571 GO:0046872
Adu07g00210 550 Coils Coil 446 474 - -
Adu07g00210 550 SUPERFAMILY CCCH zinc finger 180 203 IPR036855 GO:0046872
Adu07g00210 550 SMART rrm1_1 332 402 IPR000504 GO:0003723
Adu07g00210 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 398 IPR000504 GO:0003723
Adu07g00210 550 Pfam OST-HTH/LOTUS domain 229 307 IPR025605 -
Adu07g00210 550 MobiDBLite consensus disorder prediction 504 550 - -
Adu07g00210 550 Gene3D - 320 410 IPR012677 -
Adu07g00210 550 ProSiteProfiles OST-type HTH domain profile. 229 313 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00210 Adu-Chr7 2057452 2062342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00210 - - ahf:112701875 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g00210 07 2057452 2062342 Adu07g00210 07 2057452 2062342 ECH
Adu01g00260 01 3350871 3354652 Adu07g00210 07 2057452 2062342 PCT