Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00260 ATGGATATATCAGAGTACACGAGAATTGTTTTCGACAAGCTTCAAAAATTCGAACCAGAGCATGCCACAAAGATAATTGGATACCTCCTTGTTCAAGAACATGGCGAGGAACAGATGATTAAATTGGCTTCATACCCAGACCACCTGATCCGTGAAGTCGCTTTCAAAGCCAAAACCGAATTCCAAAGACTAACCACACTTCCAGATCTAAGGCACTTAATCACCCTCCAACTTTCCTCTCCTTCTTGGGATCATCACTCTTTCTCGGAGCTTCAGAAGCAGTTCGAGATCTTCGAAACAAGAATGGCAAATGATTACTACATTGCAGATTCCTTGCCTTGCAAGTTAAGAGGCGGAAGGAGGTTTTCGAACGAGTTTCCGGTGAAAACCTGTCACTATTTCAACAAAGGATATTGCAAGCATGGAGCCAGCTGTCGCTATTATCACGGACAGGCTGGCCACGAGATGTACGGAAGCTACGACTATTCTTCTTCTTCTTCGGTTCAGGGGGATCAAGTGATTTCGGCAGGGTCTTTGGCGAATTTGGAGTCGGAAATCGTGGAGCTGTTGAAATCAAGAAAAGGAAGCCCGATATCGATTGCTTCGCTTCCAATGGCGTACTATGAGAAGTATAACAAGGTACTGCAGGCTGAAGGTTATCTTACTGAGAGCCAGAGACATGGTAAGTCTGGTTATAGTTTGACCAAGCTTCTTGCAAGATGGAAGAATTGCATTCGCGTATTTGACAGGCCTCATGGGCAGCACGCAGTGGTTTTGGCAGAAGATGCTCCAAAATACATAGGAAAGGGAGAGTTTGGTCAAAATATTAGTGCGTCAAGACAAATATATTTGACATTTCCAGCTGATAGCACTTTCACAGAGGAAGATGTTTCAAACTACTTCAACACCTTTGGGAGTGTTGAAGATGTAAGGATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACCTTTGTTGAACCAGAAACTGTTAAAATGATTTTGGAAAAGGGAAATCCCCATTATGTTCGTGGCTCTAGGGTGCTTGTAAAACCTTACAAGGAGAAGCCAAAAGTTGATAGGTCTCTTCCTTCTAGGATTGAGCACCCTGATTGTTATTCGTCTCGCTATGTAGGTCTGGATGCAGAGCTTACAATTCCAAGAAGATGCGGTAACCCTCAAGGCCTGAGGAGATTCCTCATTGAAGAGCAGGAGCATGCTCTTGAATTCCAAAGAAGACGAGTTGCAGAGTTACAGCTAGGCCGAAAATGGATGTCGAATTCACCCCATTTTGGCTTTGACATGGAGGAGCTAAAGGTTCCTGATGATCATTTCAATCATCAGTCCACTGGATCCTCCAGTAGTTATGCTTCAACTGACAAATCTGGATATACAAAAACAGAACCTAACTATACTGATCAGGACAGCTGTGAAGGATTGAATCTCCCAGAAAGTCCATTTGCATTTCCGGTAGATAATGAAATTTCAGCCATGGTATAA 1500 0.4333 MDISEYTRIVFDKLQKFEPEHATKIIGYLLVQEHGEEQMIKLASYPDHLIREVAFKAKTEFQRLTTLPDLRHLITLQLSSPSWDHHSFSELQKQFEIFETRMANDYYIADSLPCKLRGGRRFSNEFPVKTCHYFNKGYCKHGASCRYYHGQAGHEMYGSYDYSSSSSVQGDQVISAGSLANLESEIVELLKSRKGSPISIASLPMAYYEKYNKVLQAEGYLTESQRHGKSGYSLTKLLARWKNCIRVFDRPHGQHAVVLAEDAPKYIGKGEFGQNISASRQIYLTFPADSTFTEEDVSNYFNTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILEKGNPHYVRGSRVLVKPYKEKPKVDRSLPSRIEHPDCYSSRYVGLDAELTIPRRCGNPQGLRRFLIEEQEHALEFQRRRVAELQLGRKWMSNSPHFGFDMEELKVPDDHFNHQSTGSSSSYASTDKSGYTKTEPNYTDQDSCEGLNLPESPFAFPVDNEISAMV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00260 499 SMART rrm1_1 281 351 IPR000504 GO:0003723
Adu01g00260 499 CDD RRM_AtC3H46_like 282 351 IPR034365 -
Adu01g00260 499 Gene3D - 281 360 IPR012677 -
Adu01g00260 499 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Adu01g00260 499 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 96 498 - -
Adu01g00260 499 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 96 - -
Adu01g00260 499 SUPERFAMILY RNA-binding domain, RBD 290 362 IPR035979 GO:0003676
Adu01g00260 499 Pfam OST-HTH/LOTUS domain 178 256 IPR025605 -
Adu01g00260 499 MobiDBLite consensus disorder prediction 442 485 - -
Adu01g00260 499 ProSiteProfiles OST-type HTH domain profile. 178 262 IPR025605 -
Adu01g00260 499 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 96 498 - -
Adu01g00260 499 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 96 - -
Adu01g00260 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 347 IPR000504 GO:0003723
Adu01g00260 499 MobiDBLite consensus disorder prediction 445 479 - -
Adu01g00260 499 Coils Coil 401 421 - -
Adu01g00260 499 Gene3D - 122 174 - -
Adu01g00260 499 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 151 IPR000571 GO:0046872
Adu01g00260 499 SUPERFAMILY CCCH zinc finger 127 150 IPR036855 GO:0046872
Adu01g00260 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 355 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00260 Adu-Chr1 3350871 3354652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00260 - - aip:107645763 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g00260 01 3350871 3354652 Adu01g00260 01 3350871 3354652 ECH
Adu01g00260 01 3350871 3354652 Adu07g00210 07 2057452 2062342 PCT