Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01827 ATGGCTACTTACTTTCACATTCTCTGCACTCTCTCTCTCACTCTCCTTTCTCTGACCCCATTATCCTCTTCATCCAACACCATTAAACTCTCTCTTTCTCCATTCTTCACAAACCAACCCTCCTCTTCATCTTCCGCTTCTCAACCTTTATTACAAGCCCTTAAATTTGCGGCCTCTGCTTCTCTCTCCAGGGCTCACCACCTCAAGAACCGCAAAAGCAGCGAATATGTCACCACCCCAGTATTCGCAAAGAGCTACGGCGGCTACTCCGTAGACCTCAGTTTCGGAACACCACCGCAGACATTCCCCTTCGTTCTCGACACTGGAAGCAGCCTCGTCTGGTTCCCCTGTTCCTCACGCTACCTCTGCTCCAATTGCAACTTCCCCAACATCGATCCTTCCAACATCCACACCTTCATTCCCAAGAACTCTTCAACTGCCAGATTCGTCGGCTGCACCAATCCCAAATGTGACTGGATTTTCGGTTCCGATCCTCAATCCCGCTGCCCCGGCTGCCAACCTGGATCCCCCAACTGCGCGCTCAACTGCCCTGCTTACATCATACAATACGGATTGGGCTCAACCGCCGGTCTCCTGCTACTGGACAATCTCGATTTTCCCGGAAAAATTGTCACCGATTTTCTCGTTGGCTGCTCAATCCTCTCGGTCCGGCAACCCTCCGGGATTGCCGGATTTGGACGCGGGAAGGAGTCATTGCCGTCGCAGATGAACCTCAAGAGATTCTCTTACTGTCTGGTCTCTCACCGCTTCGACGACGCGCCGGTGAAAAGCGACCTCATCTTGCACATTGGTTCCTCCGGCGGCTCCAAGACCGCCGGCGTCAGCTACACGCCGTTCCGTGCGAACCCCGCCGCGGCGAACAATTCGGCATTCGGGGAATACTACTACGTTACTCTCCGGAAGATCCTCGTCGGCGGGAAGAGGGTGAAGGCTCCTTATGCATTATTGGAGCCCGGTTTGGACGGGAACGGCGGCACCATCGTTGACTCAGGGTCAACGTTCACGTTCATGGAGAAGCCGGTGTTCGAGGTCGTAGCAAAGGAATTCGAGAAGCAGATGAAGAATTTCACGAGGGCGAAGGACGTGGAGGACCAATCAGGCTTAAGTCCTTGCTTCGATTTCAAGGGATCGAAGACAGTGCCGTTGCCGGAGCTCACCTTTCAGTTCAAGGGCGGCGCCAAAATGACGCTTCCCGTGGCCGATTATTTCTCCTTGGTTGGTCGTGCTGACGTGGCATGTCTTACAATTGTCACGGATGGCGGTTCGGCCGGCCCTGCCAGGGCCGGGGGACCGTCGATCATATTGGGGAACTACCAGCAGCAGAATTACTACGTTGAGTATGATTTGGAGAATCAGAGTTACATTGCCACCGATTCTGCGTCGGAGATACTGGCGGCGGGAACAGCGGCACTGACACCACAGTGCTTATTGGAATGTGCATGTGGTTGTAGCTGCCGGTGA 1482 0.5418 MATYFHILCTLSLTLLSLTPLSSSSNTIKLSLSPFFTNQPSSSSSASQPLLQALKFAASASLSRAHHLKNRKSSEYVTTPVFAKSYGGYSVDLSFGTPPQTFPFVLDTGSSLVWFPCSSRYLCSNCNFPNIDPSNIHTFIPKNSSTARFVGCTNPKCDWIFGSDPQSRCPGCQPGSPNCALNCPAYIIQYGLGSTAGLLLLDNLDFPGKIVTDFLVGCSILSVRQPSGIAGFGRGKESLPSQMNLKRFSYCLVSHRFDDAPVKSDLILHIGSSGGSKTAGVSYTPFRANPAAANNSAFGEYYYVTLRKILVGGKRVKAPYALLEPGLDGNGGTIVDSGSTFTFMEKPVFEVVAKEFEKQMKNFTRAKDVEDQSGLSPCFDFKGSKTVPLPELTFQFKGGAKMTLPVADYFSLVGRADVACLTIVTDGGSAGPARAGGPSIILGNYQQQNYYVEYDLENQSYIATDSASEILAAGTAALTPQCLLECACGCSCR 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01827 493 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Adu06g01827 493 CDD pepsin_A_like_plant 88 459 IPR034161 -
Adu06g01827 493 Gene3D Acid Proteases 70 260 IPR021109 -
Adu06g01827 493 PANTHER OS07G0603500 PROTEIN-RELATED 7 460 - -
Adu06g01827 493 ProSiteProfiles Peptidase family A1 domain profile. 89 464 IPR033121 -
Adu06g01827 493 Pfam Xylanase inhibitor N-terminal 89 255 IPR032861 -
Adu06g01827 493 SUPERFAMILY Acid proteases 84 459 IPR021109 -
Adu06g01827 493 PRINTS Pepsin (A1) aspartic protease family signature 440 455 IPR001461 GO:0004190|GO:0006508
Adu06g01827 493 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Adu06g01827 493 PRINTS Pepsin (A1) aspartic protease family signature 333 344 IPR001461 GO:0004190|GO:0006508
Adu06g01827 493 PANTHER BNACNNG47670D PROTEIN 7 460 - -
Adu06g01827 493 Gene3D Acid Proteases 272 469 IPR021109 -
Adu06g01827 493 Pfam Xylanase inhibitor C-terminal 302 459 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01827 Adu-Chr6 74862237 74863822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01827 87 465 Miscellaneous Gene Families AT1G44130 24.627 1.68e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01827 - - gmx:100805927 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01827 06 74862237 74863822 Adu06g01827 06 74862237 74863822 ECH
Adu06g01827 06 74862237 74863822 Adu02g02665 02 92519886 92521512 PCT