Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00540 ATGGCTAAACATTTTCTCTTGCAGCTTGTGGGTGTGCTTCTGGTACTTACATTAATCAGCTGTGGCCCATGGAGAGTGTGGAGCAGCTCACTTTGCAAGCAGACAAATTTGGAGGTTAGACCTCACAGCGTTAGTATTACAGAATTTGGCGCAGTTGGAGACGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCAATATTTTACCTTAATTCATTTGCAGACAAAGGCGGAGCGAAGCTCTTTGTCCCGGCTGGCCGTTGGTTGACCGGTAGTTTTGATCTCATCAGCCATCTAACTCTCTGGTTGGACAAAGATGCTGTAATTCTTGGATCCACAAACCCTGATGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCACAAGAGCCTCATTTATGGACAAGATTTGACTGATGTTGTTATAACAGGTAACAATGGAACAATTGATGGTCAAGGGAGTATTTGGTGGAGCCTGTTTAGGAACAAAACCTTGGATTATACGCGTCCCCATTTGGTAGAATTGATGAACTCGGCGGGGGTTCTCATCTCGAATTTAACCTTCTTAGATTCTCCATTTTGGAATATACATCCTGTATATTGCAGCCAAGTTACAGTTAAGAAAGTCAAAATCCTTGCTCCTCTTGATTCTCCAAACACGGATGGGATTGATCCAGATTCTTCCGACAATGTATGCATTGAAGACTGTTATATAAGCACGGGTGATGATCTGATTGCCATCAAAAGTGGCTGGGACGAGTATGGCATAGCGTTCGGCCGTCCCAGCACAAACATTATCATCAACAGGCTCACCGGGAGGACGGCGACGAGTGCAGGGATTGCCATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTCCATGCCCAAGACATTCGCTTCTTCGATTCGTACAGCGCCATCAGAATAAAGACTTCTCCAGGGAGAGGTGGTTATGTTAGAAATGTCTTTGTTTCTAACATGACTTTAGAAAATGTTGACATTGCTATCAGGTTCACTGGTACATATGGGGATCATCCTGATGATAAATTTGATCCAAATGCATTACCTTTGATAGAAAAGATTACAATCAAGGATGTGATTGGCCAAAACATCAAGCGCGCCGGCCTTCTAGAAGGCATAGAAGGAGACAACTTTGTAAACATCTGTCTATCAAACATCATCCTTAATGTGAGCTCAAGCTATTCATGGAACTGCTCTAATGTCCAAGGATATTCCGATTTCGTTTCGCCGGAAGCTTGCAAGCCTCTCAAGGAGAGAATATTCCCAGAGCATTGTTCAGACTGTTACAATTTATCCAATCACCTGCAAAGTTCAAATAATCAAACAAGAGGTGCTTGGTTACTATCTTGGTAA 1404 0.438 MAKHFLLQLVGVLLVLTLISCGPWRVWSSSLCKQTNLEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPDDWPVVDPLPSYGRGRELPGGRHKSLIYGQDLTDVVITGNNGTIDGQGSIWWSLFRNKTLDYTRPHLVELMNSAGVLISNLTFLDSPFWNIHPVYCSQVTVKKVKILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIINRLTGRTATSAGIAIGSEMSGGVSEVHAQDIRFFDSYSAIRIKTSPGRGGYVRNVFVSNMTLENVDIAIRFTGTYGDHPDDKFDPNALPLIEKITIKDVIGQNIKRAGLLEGIEGDNFVNICLSNIILNVSSSYSWNCSNVQGYSDFVSPEACKPLKERIFPEHCSDCYNLSNHLQSSNNQTRGAWLLSW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00540 467 Pfam Glycosyl hydrolases family 28 139 419 IPR000743 GO:0004650|GO:0005975
Adu06g00540 467 Gene3D - 29 424 IPR012334 -
Adu06g00540 467 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Adu06g00540 467 SMART pbh1 272 294 IPR006626 -
Adu06g00540 467 SMART pbh1 211 237 IPR006626 -
Adu06g00540 467 SMART pbh1 300 321 IPR006626 -
Adu06g00540 467 SMART pbh1 238 270 IPR006626 -
Adu06g00540 467 SMART pbh1 329 350 IPR006626 -
Adu06g00540 467 PANTHER OS07G0245200 PROTEIN 10 452 - -
Adu06g00540 467 PANTHER PECTIN LYASE-RELATED 10 452 - -
Adu06g00540 467 SUPERFAMILY Pectin lyase-like 37 433 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00540 Adu-Chr6 6487581 6490193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00540 1 467 Glycoside Hydrolase AT3G62110 69.684 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00540 - - adu:107492321 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00540 06 6487581 6490193 Adu09g01040 09 19424680 19432024 PCT