Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03428 ATGTATGCAAAATGCACAAACTCCTATGTTGTTGGGTTTGTCTGCACAATTTTGTTGTTGAGATCAGTAGCAGAATGCAGAGAGGTCAATGGTGTATTGGAGAATCTTGAGTACCCTGCAATTAGTTGCAGAAAACACAGTGCAAGTTTGATTGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAATACAAAGGCCTTTCAATATGCAATTGGGAACCTGAGCCATTATGGTTCTGATGGTGGAGCATTGCTTGTTGTGCCACCTGGGAAATGGTTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCACCGTGACACTATCATCCTCGCGTCTCAGGATGAATCAGAATGGCCTGAACTTTCTGTGCTACCATCATATGGTAGAGGAAGAGATGCTCCTGATGGAAGATTTAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTAGTTACTGGTTATAATGGGACAATTGATGGACAAGGCTCTTATTGGTGGGATAAGTTTCATAAGGGTGAATTGAAATTTACTAGACCATATATGATTGAGATTATGTTCTCTGATCACATTCAGATATCAAATCTCACTTTGATCAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGACTCACCATTGCTGCACCAACTGACTCTCCCAACACAGATGGAATAGACCCTGATTCTTGTACCAATACAAGGATTGAAGACTGCAATATTGTCTCTGGTGATGATTGTATTGCAGTTAAGAGTGGTTGGGATGAGTATGGAATAAAATTTGGAATGCCAAGCCAACACATAGTAATTAGAAGGCTTACATGTGTATCCCCTGATAGTGCTATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCCGAAAACCTCACTGCTATCGATACTGAATCGGCCGTTAGGATCAAAACTGCAGTTGGTAGAGGAGGATATGTTAAGGACATATTTGTTAAGGGAATGAACTTGAACAACATGAAATATGTGTTTTGGATAACAGGTTCTTATGGATCACACGCTGACAATGATTTTGATCCAAAAGCACTTCCTGATATTAGTGGCATAAACTATAGAGATGTCATAGCAGATTACTGCAATTATACAGCAAAACTTGAAGGGATTCCTAATGATCCTTTTACAGGAATCTGTGTATCTAATGTGAGTATCACAAATAGTGACATGAAGAAATTGCAATGGAATTGCACTGATGTTGAAGGTGTTTCAAGCAATGTTAGTCCTGTCCCTTGTGAATTGCTATCACAGAAGGAAGAGAAGAAATTTGATTGTCCTTTTCCAGATGAAAAACTTCCCATTGAAAGTGTTATGTTGAAGACTTGTTCCTTTAAAAGTGTCTAA 1416 0.3919 MYAKCTNSYVVGFVCTILLLRSVAECREVNGVLENLEYPAISCRKHSASLIDFGGVGDGKTSNTKAFQYAIGNLSHYGSDGGALLVVPPGKWLTGSFNLTSHFTLFLHRDTIILASQDESEWPELSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVVTGYNGTIDGQGSYWWDKFHKGELKFTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSSDIIIQGLTIAAPTDSPNTDGIDPDSCTNTRIEDCNIVSGDDCIAVKSGWDEYGIKFGMPSQHIVIRRLTCVSPDSAMIALGSEMSGGIQDVRAENLTAIDTESAVRIKTAVGRGGYVKDIFVKGMNLNNMKYVFWITGSYGSHADNDFDPKALPDISGINYRDVIADYCNYTAKLEGIPNDPFTGICVSNVSITNSDMKKLQWNCTDVEGVSSNVSPVPCELLSQKEEKKFDCPFPDEKLPIESVMLKTCSFKSV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03428 471 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 14 467 - -
Adu05g03428 471 SUPERFAMILY Pectin lyase-like 40 441 IPR011050 -
Adu05g03428 471 PANTHER PECTIN LYASE-RELATED 14 467 - -
Adu05g03428 471 SMART pbh1 242 263 IPR006626 -
Adu05g03428 471 SMART pbh1 215 241 IPR006626 -
Adu05g03428 471 SMART pbh1 404 426 IPR006626 -
Adu05g03428 471 Gene3D - 28 433 IPR012334 -
Adu05g03428 471 Pfam Glycosyl hydrolases family 28 144 425 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03428 Adu-Chr5 106728081 106730812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03428 14 469 Glycoside Hydrolase AT3G61490 65.517 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03428 - - gmx:100785005 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g03428 05 106728081 106730812 Adu09g02335 09 110397005 110398792 PCT