Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00880 ATGGGTTGGTGTTTTCGTGTGATTTCCCTATTATTATTGTTGTTGGGAGCAGAATCAAAGACTCATTGGAGTGACACACAGTTTCTGAAGGATTTCAAGAATGGGATTTACCCAAGTTCTGTGAACCCCGGCTCCTGCTTAAGTTCATGGGACTTCACTCTCGACCCGTGCGATAATCTCTTCACTCAGAAATTTACGTGCGGCTTCAGGTGCGACTCCATCGACTCCGGCTTGAGCCGAGTCACCGAACTCGCTCTCGACCAGGCCGGTTACTCCGGTCCCCTCCCTCCAACTTGGAATCTTCTTCCCTACCTCCAAACCCTCGATCTCTCCAACAACTTCTTCTACGGCAACATCCCCGGCTCCCTATCCAACTTGACTCGCTTGCGCCGACTCGCCCTCTCCGCTAACTCCTTCTCCGGCGCCATACCCTCCTCCGTTGGCTCCCTCTCCACTCTCGAGGAGCTCTGCCTCGATCACAACAACCTCACCGGAGCTATCCCCGCCACCTTCAACGGCCTCAAGAACTTGAAGAGGTTGGAGCTTCAATCCAACAAGCTCCAGGGTTGGGTTCCTCCATACTTGGGTCCCCTGAACAACCTTAACTACCTGGACGCCAGCGACAATTCCCTGATCGGAGAATTGCCAATCTGGCTGCCGGCTTCCCTGGTTCAGATTTCGATGAGGAACAACAAGTTGAGCGGAGTAGTAAAGCCAGAAGTGTTGAAAAACCTGAAGGACTTGCAGGTTTTGGATTTGAGTTGGAACAAGCTGAGTGGGGCAGTTCCTTTTGCTCTTTTCGAGCTACCATCGCTGCAGCAATTAACGCTGTCTTTCAACGAGTTTTCTTCGGTGGAAGGAAACTCCGCAGGATTTGAGAAGAGCGGATTGATCGCAGTAGACATAAGCAACAACAAGCTCAGGGGTAGTTTGCCATGGTTCATGGCGTGGATGCCTCAGCTTTCGGCATTGTCGCTGGAGAACAACATGTTGAGTGGCATGATACCAAAGGAGTATGCGATGAAGGTGGTGTCCCCGCGAAATGGGGAATCAAGTTTTGGGAGGCTTCTGTTGGGTGGCAACTACTTGTACGGAGGGATACCTCACCCTCTGTTGGGTCTTAAACCCGATTCTGCAAATGTCAGCCTTGCTAATAACTGCTTCTATAGGTGCCCTCGTACCTTCTTTTTCTGCCAAGGTGCTGCCCAGAAGCCCCCGCCACTGTGTCATAAGTAA 1236 0.5154 MGWCFRVISLLLLLLGAESKTHWSDTQFLKDFKNGIYPSSVNPGSCLSSWDFTLDPCDNLFTQKFTCGFRCDSIDSGLSRVTELALDQAGYSGPLPPTWNLLPYLQTLDLSNNFFYGNIPGSLSNLTRLRRLALSANSFSGAIPSSVGSLSTLEELCLDHNNLTGAIPATFNGLKNLKRLELQSNKLQGWVPPYLGPLNNLNYLDASDNSLIGELPIWLPASLVQISMRNNKLSGVVKPEVLKNLKDLQVLDLSWNKLSGAVPFALFELPSLQQLTLSFNEFSSVEGNSAGFEKSGLIAVDISNNKLRGSLPWFMAWMPQLSALSLENNMLSGMIPKEYAMKVVSPRNGESSFGRLLLGGNYLYGGIPHPLLGLKPDSANVSLANNCFYRCPRTFFFCQGAAQKPPPLCHK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00880 411 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 410 - -
Adu05g00880 411 SUPERFAMILY L domain-like 67 341 - -
Adu05g00880 411 Gene3D Ribonuclease Inhibitor 294 398 IPR032675 -
Adu05g00880 411 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Adu05g00880 411 Pfam Leucine rich repeat 223 281 IPR001611 GO:0005515
Adu05g00880 411 SMART LRR_typ_2 318 341 IPR003591 -
Adu05g00880 411 SMART LRR_typ_2 102 126 IPR003591 -
Adu05g00880 411 SMART LRR_typ_2 245 268 IPR003591 -
Adu05g00880 411 SMART LRR_typ_2 150 173 IPR003591 -
Adu05g00880 411 SMART LRR_typ_2 269 294 IPR003591 -
Adu05g00880 411 SMART LRR_typ_2 174 198 IPR003591 -
Adu05g00880 411 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515
Adu05g00880 411 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 410 - -
Adu05g00880 411 Gene3D Ribonuclease Inhibitor 190 293 IPR032675 -
Adu05g00880 411 Gene3D Ribonuclease Inhibitor 24 189 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00880 Adu-Chr5 10899653 10901162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00880 69 371 Receptor kinase-like Gene Family AT3G11080 35.974 4.17e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00880 - - gmx:100811366 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00880 05 10899653 10901162 Adu05g00880 05 10899653 10901162 ECH
Adu01g00115 01 1650269 1651966 Adu05g00880 05 10899653 10901162 ECH
Adu05g00880 05 10899653 10901162 Adu01g00115 01 1650269 1651966 PCT