Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00308 ATGGACGTTCGCCGGCGACACCACTCTTCGGCCCCCGCCGGCGAACCTTTGAAAAAGAAGAACACCCCGCCACCTCCCCCAGCACCTCAGCTGGTGTCCACGGTGGTTCCTCTGTACGTAACAAACGGCGTCTTCTTCGGGGTGTTCTTCTCGGTGGCATACTTCCTCCTCCACCGGTGGCGCGAGAAGATCCGAAACTCGACCCCTCTCCACGTGGTCACGCTCTCGGAGATGGCAGCTTTCCTCTCCTTAATCGCTTCCCTCATCTACCTCCTTGGATTCTTCGGCATTGGCCTTGTCCAACCCATTATTGCAGCTTCCTCACGACCTTCCTCCGATGACGAAGCAGAAGAAGAAGAAATCATTAAAGACGACGCAAGAAACCCCGGTCCCTGCCCCGCCGGAATAATCGACTGCTCCGCCGTCGCCGCTATTTCTCCTGCTCCGCCATCGCAGAAACCTCAGCTTCCACTTCACGTTCCGCCTCAGATTCCTCCTCTCTCTTCCGACGACGAGGAGCTCGTACAGCAGGTGGTGTCCGGCGAGGTTCCGTCGTACTCTCTGGAGTCCAGACTCGGTGACTGCCGGCGTGCGGCGGTGATACGGCGCGCGGCGGTGGAGAGAGTCACCGGAAGGTCCCTGGAGGGTCTTCCGGTGGAAGGTTTCGATTATGATTCGATCTTGGGACAGTGCTGCGAGATGCCGATAGGGTTTGTTCAGATTCCGGTGGGTGTTGCGGGTCCATTGTTGCTCGATGGGGTTGAGCACACGGTGCCAATGGCCACCACCGAGGGCTGTTTGGTTGCAAGCACAAACAGGGGTTGCAAGGCCATATCTGTCTCCGGCGGCGCCTCCTCCGTCGTCCTCCGTGATGGCATGACCAGGGCTCCCGTCGTCAGGTTCGCCACCGCCGTCAGAGCCGCACAACTCAAGTCCTACCTTGAAGACCCAATCAACTTCGATTCCCTCGCTGTCGTTTTCAACAAGTCAAGCAGGTTTGCAAGGTTACAGAAGATCAAGCCTGCCCTTGCAGGGAAGAATTTGTACATTAGATTCAGTTGCAGCACCGGTGACGCCATGGGCATGAACATGGTCTCCAAAGGTGTCCAAAATGTTCTTGATTTTCTCCAAACTGATTTCTCAGACATGGAAGTCATTGGAATTTCAGGAAATTATTGTTCGGACAAAAAAGCTGCCGGAGTTAACTGGATCGAAGGGAGGGGTAAATCAGTGGTGTGTGAGGCGATAATCAAGGAGGAGGTGGTGAAGAAAGTGCTCAAGACAAACGTAGAGTCTTTGGTTGAGCTGAACATGCTGAAGAACCTCACCGGATCCGCGGTGGCCGGTGCTCTCGGCGGATTCAATGCTCATGCGAGCAATATTGTATCCGCCGTGTACTTGGCCACTGGGCAGGACCCTGCTCAGAATGTAGAGAGCTCTCATTGCATCACCATGATGGAGGCCGTCAACAATGGCAAGGACCTTCATATCTCTGTCACCATGCCTTCTATTGAGGTGGGAACAGTTGGAGGGGGAACACAACTGTCATCTCAATCAGCATGCCTTAGCCTACTTGGAGTGAAGGGTGCATGCAAAGAGAGTCCAGGTGGAAACGCAAAACAATTGGCCACAATAGTAGCAGGTGCAGTTCTAGCAGGTGAGCTCTCTCTCATGTCTGCAATTGCAGCTGGTCAACTGGTCAAGAGTCACATGAAATACAACAGATCTAGCAGGGATGTTTCCAAGATGGTCTCATAA 1758 0.5415 MDVRRRHHSSAPAGEPLKKKNTPPPPPAPQLVSTVVPLYVTNGVFFGVFFSVAYFLLHRWREKIRNSTPLHVVTLSEMAAFLSLIASLIYLLGFFGIGLVQPIIAASSRPSSDDEAEEEEIIKDDARNPGPCPAGIIDCSAVAAISPAPPSQKPQLPLHVPPQIPPLSSDDEELVQQVVSGEVPSYSLESRLGDCRRAAVIRRAAVERVTGRSLEGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEHTVPMATTEGCLVASTNRGCKAISVSGGASSVVLRDGMTRAPVVRFATAVRAAQLKSYLEDPINFDSLAVVFNKSSRFARLQKIKPALAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLQTDFSDMEVIGISGNYCSDKKAAGVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVESLVELNMLKNLTGSAVAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNNGKDLHISVTMPSIEVGTVGGGTQLSSQSACLSLLGVKGACKESPGGNAKQLATIVAGAVLAGELSLMSAIAAGQLVKSHMKYNRSSRDVSKMVS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00308 585 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 164 564 IPR009029 GO:0015936|GO:0016616
Adu05g00308 585 CDD HMG-CoA_reductase_classI 172 575 IPR004554 GO:0004420|GO:0005515|GO:0008299
Adu05g00308 585 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 292 408 IPR009023 -
Adu05g00308 585 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 171 575 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 MobiDBLite consensus disorder prediction 108 129 - -
Adu05g00308 585 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 351 365 IPR023076 GO:0004420
Adu05g00308 585 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 560 573 IPR023076 GO:0004420
Adu05g00308 585 Gene3D - 292 408 IPR009023 -
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 231 252 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 258 278 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 349 367 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 389 414 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 440 466 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 494 515 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 585 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 506 513 IPR023076 GO:0004420
Adu05g00308 585 Gene3D - 242 570 IPR023074 GO:0004420
Adu05g00308 585 Pfam Hydroxymethylglutaryl-coenzyme A reductase 200 575 IPR002202 GO:0004420|GO:0015936
Adu05g00308 585 MobiDBLite consensus disorder prediction 1 26 - -
Adu05g00308 585 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 171 575 IPR004554 GO:0004420|GO:0005515|GO:0008299
Adu05g00308 585 Gene3D - 167 241 IPR023282 GO:0004420
Adu05g00308 585 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00308 Adu-Chr5 3253463 3259016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00308 24 581 Lipid Metabolism Gene Families AT1G76490 71.326 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00308 K00021 - nnu:104603825 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g00559 07 5818169 5822140 Adu05g00308 05 3253463 3259016 ECH
Adu05g00308 05 3253463 3259016 Adu05g00308 05 3253463 3259016 ECH
Adu05g00308 05 3253463 3259016 Adu01g00884 01 11693048 11696840 PCT