Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00947 ATGGTGATTGCAAAGAGAGTTGGTGTTGATGTTATTTTGTGGTTGGCAGTGGCTTGTTTTGTGGTAGAAGGTGATGAAAGAGTAAGGCCAATTGCTGGGCCTGATATCTATGAGGGTCGCAATGTAGCTAAGGATGTTCTTGCTCCTGGTGAGATTATTAATAATGTCATGAGCTTTGGTGCCAAACCTGATGGGAAGTTTGATTGCACTCAGGCGTTCATGGACGCATGGAGAGCAACATGCAAGTCGAAAGTGCAAGCAAGGGTTCTGGTCCCTCTAGGAAGGTTCGTGGTTTCGGCAATGTACTTCGCCGGGCCGTGCACGACTCCGGGGCCCGTCACGGTCCAAGTTGAAGGCACCGTGGTTGCAACAACGGACATCAGCGAGTATGTTGACGGCGAATGGCTCATGTTCCAAGACCTCTCCGGTATCAAACTCATTGGTGGTGGCACCTTTGATGGACAAGGAAAAGATTCATGGTCCCAAACTGAGAATTGTGAAACCGACTCCGATAGCGCCTGTGTTAGAGCTCCTAGTAGCATTTTCTTCAGCAGGGTGAACAATGGAATCATACAGAACATAAAAACCTTGAACCCCAAAGGCTTTCACATATTTGTCACAAACTGTGCCAACATTAGACTTAGGTTGCTTAAGCTCACAGCACCAGGTACCAGCCCCAATACTGATGGAATCCACATTAGCCACTCCATCAATGTCAAAATATCAAAATCCAACATTGAAACCGGTGATGATTGTGTCTCTATGATTCAAGGGGTCAACAATGTTACCATTAAGAGACTAAAGTGTGGCCCTGGACATGGTATTAGTATTGGTAGTCTTGGAAAATATCAAGATGAGCTAGAGGTGAGAGGAATTAGGGTGGAGAATTGCACATTGGTTGGCACAACCAATGGCCTAAGAATAAAGTCATGGCCAGAGAAGTATTCAGGTTTAGCAACAGATATAAGCTATAGTGATATTACCATGGAAAATGTTAAAAACCCTATCATCATTGATCAAGAATATCAATGTTCTCCAGGCATCTGCAAAAAGAAGCCATCACTTGTAAAGATATCAAATGTTGGTTTTATAAATGTAAAAGGAACAACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGTAAGCAATTCCCATGTGAAAATGTTCAACTTCACAACATAGACCTCAAGCTTCTTGGACCTATCCTTCCTTCTGGCGCAAGATGTGCCAACGTTAAACCTATCTATGGAGGCATTCAAATGCCACCAGCATGTCCATAG 1281 0.4364 MVIAKRVGVDVILWLAVACFVVEGDERVRPIAGPDIYEGRNVAKDVLAPGEIINNVMSFGAKPDGKFDCTQAFMDAWRATCKSKVQARVLVPLGRFVVSAMYFAGPCTTPGPVTVQVEGTVVATTDISEYVDGEWLMFQDLSGIKLIGGGTFDGQGKDSWSQTENCETDSDSACVRAPSSIFFSRVNNGIIQNIKTLNPKGFHIFVTNCANIRLRLLKLTAPGTSPNTDGIHISHSINVKISKSNIETGDDCVSMIQGVNNVTIKRLKCGPGHGISIGSLGKYQDELEVRGIRVENCTLVGTTNGLRIKSWPEKYSGLATDISYSDITMENVKNPIIIDQEYQCSPGICKKKPSLVKISNVGFINVKGTTISPIAVDLRCSKQFPCENVQLHNIDLKLLGPILPSGARCANVKPIYGGIQMPPACP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00947 426 Gene3D - 48 420 IPR012334 -
Adu04g00947 426 SUPERFAMILY Pectin lyase-like 53 425 IPR011050 -
Adu04g00947 426 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Adu04g00947 426 PANTHER - 3 425 - -
Adu04g00947 426 Pfam Glycosyl hydrolases family 28 81 413 IPR000743 GO:0004650|GO:0005975
Adu04g00947 426 PANTHER POLYGALACTURONASE 3 425 - -
Adu04g00947 426 SMART pbh1 259 279 IPR006626 -
Adu04g00947 426 SMART pbh1 319 340 IPR006626 -
Adu04g00947 426 SMART pbh1 236 257 IPR006626 -
Adu04g00947 426 SMART pbh1 289 310 IPR006626 -
Adu04g00947 426 SMART pbh1 209 235 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00947 Adu-Chr4 15923283 15927431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00947 46 425 Glycoside Hydrolase AT4G18180 42.963 7.05e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00947 K01213 - gmx:106796220 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00947 04 15923283 15927431 Adu04g00947 04 15923283 15927431 ECH
Adu01g02622 01 95466695 95472311 Adu04g00947 04 15923283 15927431 PCT