Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02622 ATGGGCATTGCAAAGCAAAATACTCTTTTTATTACTATTATTTGCTTTGCATTGGCCTCTTATGCGGTTGCTAGGCCAAGAGCACGGCCATATAGTGGTCCAGACGTCTACAGGGGCAGGAATGTAGCACGAGATATCCTTTTTCCCGGCGAGAAGGTTAACAATGTGCTCGATTTCGGAGCCCAGCCCGACGGCGAATTCGACTCTACCCAGGCATTCATGGATGCATGGCAAGCAACATGCAAATCAACAGTGCAGAGTAGGGTATATGTTCCAGAGGGTAGATTCTTGGTTTCCTCAATGTTCTTTTCAGGGCCATGCATGACCCCACATCCCGTAACAGTTCAAGTTGATGGAACTATTTTGGCCCCTACCGATATTTCCGAGTTTGAAAACGATGAGTGGCTCCTTTTCCAGAACCTTAACGGCTTAAGACTCATTGGTCAAGGTACCTTTGATGGGCAGGGTAAGGATTCATGGAAATACACCGAGAATTGTGAATCTAAGAGAGACGGTTCTGCATGCGTCAGAAATCCTAGCAGTCTTTTCTTCAGCCGGGTCAACGATGCGATTATACAGGGGATTAGGTCTGTGAATCCAAAAGGGTTTCACATATTTGTGACTAACTGTGGAAACATAAGGTTGCGAAGGCTTAAGCTTACAGCACCAGAAACTAGCCCCAACACTGATGGCATCCATGTTAGCCACTCCATCAATGTCATCATGTCTAGAAACACCATTGCAACTGGTGATGACTGTGTCTCTATAATCCAAGGTTCTGTCAATGTTACCATGAACAGACTCAGGTGTGGCCCAGGACATGGTGTTAGCATCGGTAGCCTTGGAAAGTATGCGGACGAGTTAGAAGTGAAAGGTATTCGCCTCATAAACGCCACATTGCTTGGAACAACCAATGGTGTCAGAATCAAAACTTGGCCAGATAGATTCCCAGGTTCAGCCTCGGATATATTTTTCACAAACATCGACATGGTAAATGTTAAAAACCCCATCATCATTGACCAAGAGTATGAATGCTTTCCAAACTGCAAAAAGAAGCCATCACTTGTGAAGCTTAACAATATTCAATTCAATAATATAAGGGGAACCACGATTAGTCCAGTTGCAGTGGACTTAAGGTGCAGCAAATTGTTCCCATGCAAAGGTGTCATACTTCGCAACATTGATCTCAAGCTTGGATTGCTTCCAACCATGTCTAGATGTGTTAACATTAATCCACTGTATTTCGGCGGTTTGCAAGTCCCACCAGCTTGCGTTTAG 1278 0.4452 MGIAKQNTLFITIICFALASYAVARPRARPYSGPDVYRGRNVARDILFPGEKVNNVLDFGAQPDGEFDSTQAFMDAWQATCKSTVQSRVYVPEGRFLVSSMFFSGPCMTPHPVTVQVDGTILAPTDISEFENDEWLLFQNLNGLRLIGQGTFDGQGKDSWKYTENCESKRDGSACVRNPSSLFFSRVNDAIIQGIRSVNPKGFHIFVTNCGNIRLRRLKLTAPETSPNTDGIHVSHSINVIMSRNTIATGDDCVSIIQGSVNVTMNRLRCGPGHGVSIGSLGKYADELEVKGIRLINATLLGTTNGVRIKTWPDRFPGSASDIFFTNIDMVNVKNPIIIDQEYECFPNCKKKPSLVKLNNIQFNNIRGTTISPVAVDLRCSKLFPCKGVILRNIDLKLGLLPTMSRCVNINPLYFGGLQVPPACV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02622 425 PANTHER - 7 421 - -
Adu01g02622 425 Pfam Glycosyl hydrolases family 28 81 411 IPR000743 GO:0004650|GO:0005975
Adu01g02622 425 Gene3D - 49 413 IPR012334 -
Adu01g02622 425 SUPERFAMILY Pectin lyase-like 49 422 IPR011050 -
Adu01g02622 425 PANTHER POLYGALACTURONASE 7 421 - -
Adu01g02622 425 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02622 Adu-Chr1 95466695 95472311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02622 55 424 Glycoside Hydrolase AT4G18180 45.619 7.94e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02622 K01213 - gmx:106796220 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02622 01 95466695 95472311 Adu01g02622 01 95466695 95472311 ECH
Adu01g02622 01 95466695 95472311 Adu04g00947 04 15923283 15927431 PCT