Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00931 ATGCTTGTAAGAAATCTTGTGAGAATCAGTGGGTTGCATTTTCCATCTTTTTACTATTATCTTTTTCAGGTGGCATTGCTCTTGCTTCTGGCATGGAGCAATGCCGTGATAATTGTTGATGGATATGGTGGACAATGTAGTTTGAATCCAACACTTGATCCTAGACCACACAGTGTCTCAATTCTTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTCAACACAATCCCTTTCCAAAATGCTGTCTTCTATCTCAAGTCATTCGCTGATAAAGGCGGCGCTCAGCTCTATGTGCCGCCCGGAAAATGGCTCACAGGAAGCTTCAACCTCACTAGCCACCTTACCCTTTTTTTGGAAAAAGGTGCTACTATTATTGGATCTCAGGATCCAACTCATTGGGATGTTGTAAAGCCCTTACCTTCTTATGGCCGAGGGCTCGAAGTTCCCGGGGGACGATACCAGAGCTTGATCAATGGATACCAGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATCAACGGCATGGGATCTGTTTGGTGGGAGTGGTTTACCTTGCATACACTGAATCATAGCCGTCCTCATCTGATTGAACTCGTCGAATCTGATTATGTGGTAGTTTCAAATCTCACAATCTTGAATGCCCCGGCATACGCAATACACCCTGTTTATTGCAGCTATGTACATATTCAAAATGTATCAATTTCTGCTCCTGCAGAATCACCTTTTACTGTTGGTATAGTTCCTGATTCTTCTAATAATGTTTGTATAGAAGATTGCATTGTTGCTATGGGACATGATGCAATTTCTCTTAAAAGTGGTTGGGATGAGTATGGTGTTGCCTATGGTAGACCAACAGAGAATGTACACATTAGAAGGGTGACTTTGAGTGCATTTTCTGGCTCTACTCTTGCATTTGGTAGTGAAATGTCTGGTGGTCTTTCGAATGTTTTCGTGGAACATTCTCATGTTCTCGACTCAGATAAAGGCGTCCAGTTCAGAACAACCAGAGGTAGAGGTGGTTACATGAAAGAAATTGTTATATCTGACATACAAATGGACAATGTCTATGTTGCGATTGCGGCCACAGGTCATTGTGGTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAGGGTGTTATTGGCAGAAACATCACTGTTGCCGGAAGCTTTGCTGGAATAGAAGAATCCCCTTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATAAACTCTATTTCAAGTGCCTGGGAATGTTCAAATGTCTTAGGATCTTCGGATTTTGTCAATCCTGAACCTTGTCCAGAACTTCGGAACCCTACAAACTCTTCCTCGTCGTGTTTCTACTTACTGAGTACCAGTGGAAGAAAAGCCTCAGCACTGTGA 1410 0.4135 MLVRNLVRISGLHFPSFYYYLFQVALLLLLAWSNAVIIVDGYGGQCSLNPTLDPRPHSVSILEFGAVGDGKTLNTIPFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATIIGSQDPTHWDVVKPLPSYGRGLEVPGGRYQSLINGYQLHDVVITGNNGTINGMGSVWWEWFTLHTLNHSRPHLIELVESDYVVVSNLTILNAPAYAIHPVYCSYVHIQNVSISAPAESPFTVGIVPDSSNNVCIEDCIVAMGHDAISLKSGWDEYGVAYGRPTENVHIRRVTLSAFSGSTLAFGSEMSGGLSNVFVEHSHVLDSDKGVQFRTTRGRGGYMKEIVISDIQMDNVYVAIAATGHCGSXXXXXXXXXXXXXXLKGVIGRNITVAGSFAGIEESPFTNICLSNITLSINSISSAWECSNVLGSSDFVNPEPCPELRNPTNSSSSCFYLLSTSGRKASAL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00931 469 Gene3D - 49 437 IPR012334 -
Adu04g00931 469 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 23 461 - -
Adu04g00931 469 Pfam Glycosyl hydrolases family 28 155 430 IPR000743 GO:0004650|GO:0005975
Adu04g00931 469 SMART pbh1 315 336 IPR006626 -
Adu04g00931 469 SMART pbh1 203 225 IPR006626 -
Adu04g00931 469 SMART pbh1 253 274 IPR006626 -
Adu04g00931 469 SMART pbh1 287 309 IPR006626 -
Adu04g00931 469 SMART pbh1 226 252 IPR006626 -
Adu04g00931 469 SMART pbh1 344 365 IPR006626 -
Adu04g00931 469 SUPERFAMILY Pectin lyase-like 53 447 IPR011050 -
Adu04g00931 469 PANTHER PECTIN LYASE-RELATED 23 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00931 Adu-Chr4 14941646 14944508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00931 24 456 Glycoside Hydrolase AT3G16850 60.870 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00931 - - adu:107483516 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00931 04 14941646 14944508 Adu04g00931 04 14941646 14944508 ECH
Adu01g02612 01 95372637 95374852 Adu04g00931 04 14941646 14944508 PCT