Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02612 ATGCTAGTGGCACTAGTGTTGCTGCTGGCATTGAGCAATGAAGTAAGAGTTAATGGTTATGGTGGTTCTGAGCAATGTGAGTATAGTCCAGAACTAGCTCCAAGACCACACAGTGTGTCTATTTTGGAGTTTGGTGCTGTTGGGGATGGAAAGACACTGAATACCATTGCATTCCAGAATGCAATATTCTATCTCAAGTCATTCGCCGATAAGGGCGGCGCTCAGCTTTATGTGCCGCCTGGACAATGGCTCACTGGAAGCTTCAACCTCACTAGCCATCTTACCCTCTTTCTAGAAAGAGGTGCTGTCATTATTGGATCTCAGGATCCATTTCATTGGGAAGTTATTGATCCTTTACCTTCTTATGGACGAGGAATCGAAGCTCCCGGCGGAAGATACCTTAGCTTGATAAATGGATACATGTTAAATGATGTGGTCATTACAGGCAACAATGGGACCATAGATGGTGTTGGATCGATTTGGTGGCGATCCTTTATTTCTCATTCCCTGAACTATAGTCGACCTCATCTAATCGAATTAGTCGCATCTAACTCGGTGGTAGTTTCAAATATCACATTCCTGAATACCCCTGCATATGGCATCCACCCAGTTTATTGCAGCAATGTACATATTCACAATATTTCAATATCAGCTCCTTCAGAATCCCCTTTCACTGTTGGCATAGTACCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTACAATTAGCATGGGGTTTGATGCAATTGCACTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTACAAAAAATGTGCACATCAGAAGGGTGCATCTCCAATCTTCTTCCGGCTCTACTCTTGCGTTTGGCAGCGACATGTCTGGCGGCATTTCGAATGTCCTAGTGGAGCATGTTCATCTCTACAACTCAAAAACCGGCATTGTGTTCAGAACCACCAGGGGAAGAGGTGGTTACATGAAGGAGATAGTTATATCAGACATAGAAATGGAGAACATATACCGAGCGATCGCGGCCACAGGCCACTGTGGATCTCATCCTGATGACAAGTTTGATCCTAATGCTCTCCCACACTTGGATCAAATTATATTGAAGAACATGACTGGGACAAACATCACTATTGCTGGAACCTTTTCTGGACTAGAAGAATCTCCTTTTACTAACATATGCCTTTCAAATCTAAACTTCTCTCTCAATTCTATGTCTCCCTTTACATGGGAATGCTCAAATGTCTCTGGATTCTCTGAATCTGTTGTCCCAAAACCTTGTCTTGATCTTGAGACCCCTTCAGTTTCTTACACAGCATGTTCCTCCATGCTAAGCAATAGAGCAAAGGCAACAACACAAGCTTCATATTCTTCTGCTTGA 1380 0.4326 MLVALVLLLALSNEVRVNGYGGSEQCEYSPELAPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGQWLTGSFNLTSHLTLFLERGAVIIGSQDPFHWEVIDPLPSYGRGIEAPGGRYLSLINGYMLNDVVITGNNGTIDGVGSIWWRSFISHSLNYSRPHLIELVASNSVVVSNITFLNTPAYGIHPVYCSNVHIHNISISAPSESPFTVGIVPDSSDNVCIEDCTISMGFDAIALKSGWDEYGIAYGRPTKNVHIRRVHLQSSSGSTLAFGSDMSGGISNVLVEHVHLYNSKTGIVFRTTRGRGGYMKEIVISDIEMENIYRAIAATGHCGSHPDDKFDPNALPHLDQIILKNMTGTNITIAGTFSGLEESPFTNICLSNLNFSLNSMSPFTWECSNVSGFSESVVPKPCLDLETPSVSYTACSSMLSNRAKATTQASYSSA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02612 459 PANTHER PECTIN LYASE-RELATED 2 443 - -
Adu01g02612 459 SMART pbh1 206 232 IPR006626 -
Adu01g02612 459 SMART pbh1 324 345 IPR006626 -
Adu01g02612 459 SMART pbh1 295 316 IPR006626 -
Adu01g02612 459 SMART pbh1 183 205 IPR006626 -
Adu01g02612 459 SMART pbh1 233 254 IPR006626 -
Adu01g02612 459 SMART pbh1 267 289 IPR006626 -
Adu01g02612 459 Gene3D - 25 421 IPR012334 -
Adu01g02612 459 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 443 - -
Adu01g02612 459 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Adu01g02612 459 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02612 Adu-Chr1 95372637 95374852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02612 1 457 Glycoside Hydrolase AT3G16850 59.956 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02612 - - gmx:100802343 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02612 01 95372637 95374852 Adu01g02612 01 95372637 95374852 ECH
Adu01g02612 01 95372637 95374852 Adu04g00931 04 14941646 14944508 PCT