Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00800 ATGTTTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTCACAGCAAAGGATGATGTAGATAATCGTATTTACCCCGCAAAGGGATCATCATTGGAATGTGTGCTTGCTGTTGTAATGTGTCATATTGGTCAGAAGCCATGTATTTGTTCATATTTTGATCCAAGATATGGCTTCTCTTCGCAAATCCTTACAATTCCGTTCCTGTGGGATGCTTTTCCAGACTTAAGACAGGTTTATGCAACACAAGGCCTGAATCAACATTGTGTTCATCAGATGGCAACTCTTGTTCCAGATCTAATCAATTTTCTACCTAAGGACATATCTGATGAAATTCCTACCTATGCTTGTCTGCTTGGAAATATATTAGAAACCGCGGGAATTGCTTTATCACAACCTGACTGTTCGTTTGATATGGCCATGGACCTTGCAGCTATTGCTACATTTTTGCTTGAGTCACACCCATCGCTGAAACTGTTGAATAAGAAAGAAAATTCCATGACTCGTGAGGATGACACTGGTGATGATGAAGTCATGGAAGTAGCTTTGGACAGGAAATTGGAGCAACAAATTTGCAATGCCATAGATACTCGCTTCCTTCTACAATTGACAAATATATTATTTAGAGATATTTCATCTGTCAATGGTTCAGATTATGGGCCAGATGATCGGGAGGTTGCAGCTGTTGGTGCTATTTGTGGATTTTTATATGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTTGCTTACAGAACCGAACTTGTTCCTATGTTATGGAAATTTATGAAGCAGTGTCATGAGAATAAACAATGGTTATCTTTGTCTGAGCGGTTATCTTACCTTTCTGGTGACGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAGGAGTTCTATGAGCAGGGGAAACCACTATCACTGGAGGACATTAGAAGCCTAATCATTCTGTTAAAACAGGTTCTGTGGCAGTTGTTGTGGGTGAATCATACATCATCTGCTACTCCAGTAAAATCTGTTCCAGTTACCACGGTTAGTAAAAGGCAATCTATTGAAGCCATTCAACAGAGGGTTAGCATTGTGGTCTCTGAGCTGCTTTCCCAGCTGCAAGATTGGAACAATCGTCGACAGTTTACTTCCCCCACTGACTTCCATGCTGATGGGGTGAATGACTCCTTCATCTCTCAGGCTTTGATGGAAAAGACACGAGCAAATGAAGTTTTAAAACAGGCTGCTTTTTTGATACCATTTACAAGCAGGGTTAAAATATTCACTTCTCAACTAGCTGATGTTCGGCAACAACATGGATCTCAGGCCTTATTTACTAGAAACAGATTCAGAATAAGACGAGATCATATATTGGAGGATGCTTATAATCAAATGAGCCAGTTGTCAGAAGATGATCTTCAGGGATTGATTCGTGTGAGTTTTGTAAACGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAGACAGCAGATCACCAGCTTTATCCCAATCCTGGATCAGGGATGATACATGAGCAACATCTTCAATTTTTCCACTTTCTTGGTACACTCCTTGCAAAGGCAATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTAATTTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCATCTTTGGACCCAGAATTGTATCGTCATCTTATATTTCTAAAGCATTACGAGGGTAACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAACAATGAATATGGAGAGCAAACTGAAGAGGAGCTCCTACCTGGCGGGAAAAACAAACGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCTAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAAGATTGGATTGATATGTTTAACGAGCAAGAACTGCAGCTTTTGATATCGGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGACTTCATACGAATTATGCAGGAGGCTATCATAGCGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGATTTTCCACGGAAAACAAGAAAAAGTTTTTGAAATTTGTGACAGGCTGCTCTCGCGGACCATTGCTTGGTTTCCGGTATCTTGAACCTTTGTTTTGCATGCAAAGGGCTGGTGGTAATGCTATTGATGAAGCCCTAGATCGCTTACCCACATCAGCTACTTGTATGAATCTGCTCAAGCTTCCGCCTTATACAAGTAAGGAGCAAATGGAAACCAAATTATTGTATGCTATAAATGCCGAAGCTGGATTTGATTTGAGTTAA 2472 0.3981 MFQNNAFGLLREIILTAKDDVDNRIYPAKGSSLECVLAVVMCHIGQKPCICSYFDPRYGFSSQILTIPFLWDAFPDLRQVYATQGLNQHCVHQMATLVPDLINFLPKDISDEIPTYACLLGNILETAGIALSQPDCSFDMAMDLAAIATFLLESHPSLKLLNKKENSMTREDDTGDDEVMEVALDRKLEQQICNAIDTRFLLQLTNILFRDISSVNGSDYGPDDREVAAVGAICGFLYVIFNTLPLERIMTVLAYRTELVPMLWKFMKQCHENKQWLSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQGKPLSLEDIRSLIILLKQVLWQLLWVNHTSSATPVKSVPVTTVSKRQSIEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDSFISQALMEKTRANEVLKQAAFLIPFTSRVKIFTSQLADVRQQHGSQALFTRNRFRIRRDHILEDAYNQMSQLSEDDLQGLIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHQLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFANFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGNISELELYFVIVNNEYGEQTEEELLPGGKNKRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEQELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSTENKKKFLKFVTGCSRGPLLGFRYLEPLFCMQRAGGNAIDEALDRLPTSATCMNLLKLPPYTSKEQMETKLLYAINAEAGFDLS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00800 823 CDD HECTc 461 821 IPR000569 GO:0004842
Adu04g00800 823 Gene3D Hect, E3 ligase catalytic domain 587 666 - -
Adu04g00800 823 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL6 33 823 - -
Adu04g00800 823 Pfam HECT-domain (ubiquitin-transferase) 518 823 IPR000569 GO:0004842
Adu04g00800 823 Gene3D Hect, E3 ligase catalytic domain 705 822 - -
Adu04g00800 823 ProSiteProfiles HECT domain profile. 482 823 IPR000569 GO:0004842
Adu04g00800 823 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 33 823 IPR044611 GO:0000209|GO:0061630
Adu04g00800 823 SMART hect_3 480 823 IPR000569 GO:0004842
Adu04g00800 823 SUPERFAMILY Hect, E3 ligase catalytic domain 451 815 IPR035983 GO:0004842
Adu04g00800 823 Gene3D Hect, E3 ligase catalytic domains 463 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00800 Adu-Chr4 11317478 11327667 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00800 K10589 - gmx:100787467 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00800 04 11317478 11327667 Adu04g00800 04 11317478 11327667 ECH
Adu01g02515 01 94271445 94281229 Adu04g00800 04 11317478 11327667 PCT