Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02515 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGCGTCGATTTGGGCGGTCGCAGCTCCAAGGAAAGGGACAGGAAGAACCTTCTAGAACAGACTCGCGTCGAACGCAACCGCCGCCTCTGGCACCGTCAACAGAACTCTGCTGCGCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGATGTCAGACTTGAAAAGTCTAGGTTGCGAGAGCAGTTCTACAAGACCTATGGCAAGTACTGCCAGAATGTAGACAGGAATTCTTTCTGTGTCAACTCTGATTTCCTTCGCCAGTTCCTTTATTTCTTTAAGGCAGACAATATAGATGATTTTTTAGTTCTCGTGCAGATATGCCGATTGCTTCAGCAGTTCGTTCACGAAGATGGGGATGTTGTCAAACATTTTGCTGGTGTGGATTACTCATCCACGGGTGGTTTGGTGAATTACCGAGTGAAGCAACTTGTATATTCTTGTATTTGTGCACTACATCAGAATAGAAATCAGTTGAAGGATCAGCTTTTATTGAGTCCTGAGGAATTGGATGCGTCGGCTGTGCCTTTATTGGAAGTTATAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGCAAGATAGTAGGATATCTCTTTCAAAACAATGCATTAGGGCTACTCAGAGAGATTATCCTTACAGGAAAGGGTAATGCAGAAAATTATTTTCCCATTGGAAAAGGATCATCGTTGGAGCGTCTTCTTATGGTTGTAATTTGTCACATTGGTCAGAAACCATGTGTTTGTTCAGATATCAATCCAAGATATAGCTTTGCATCACAGATCATTACTATTCCATTCGTGTGGCATCTCTTCCCAAACTTAAGACAGGTTTTTGCAGCAGAGGGCATGAGTCAACATTATATTCATCATATGGCAACATTTGGGCAAAATCTAATCAATTCGCTACCCAAAGATATGTCAAATGAAGTTCCTAGCTATGCATGTATGCTTGGAAATATATTAGAAACATCTGGAGTTGCTTTATCTCAGCCTGCGTGTTCATTTGATATGGCCGTAGATCTTGCTGCTGTTACTACCTTTCTAATGGAGGCACTTCCTTCTGTGAGAACATCTGATAATAGAGAAAGTTCAATGATTCTTGATGACGATATGATTGAAGATGAAGCAGCTGCGGAAGTAGCTTTAGATAAGAAACTGGAGCAGCAGATTTATAATGCCATAAACCCTCGCTTCCTTCTACATCTGACAAATATACTATTTAGAGAGATTTCATCTGTCAATGCTTTAGAGTATGGACCAGATGATAGAGAGGTGGCAGCTGTTGGTGCAGCTTGTGGGTTTTTGTATGTTACCTTCAACAAACTTCCCATGGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAAAATAAGAAATGGTCATCTTTGTCTGAGTGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTACCACTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATAGTCGATAATGAGGAATTTTATGAGCAGGAGAGGCCACTGTCACTGAAGGATATCAGAAGCCTTATCATTATATTGAGACAGGCTTTATGGCAGCTGCTGTGGGTAAATCATACCACAAATCCTAATTTGCTGAAATCTGCTTCAGCCAGTTCGGCTAGTAAGAGGCAGTCTGTTGAAGCTATTCAACAGAGGGTTAGCATTGTGGTTTCTGAGCTTCTTTCACAGCTGCAAGATTGGAACAACAGGCGGCAGTTTACATCCCCCAGTGATTTTCATGCAGATGGGGTGAATGACTTTTTTATCTCCCAGGCTGTAACAGAAAACACACGAGCAAATGAAATTTTGAAGCAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCAGTTAGGCAAAGACATGGTTCTCAGGCTGGATTTACTCGAAACCGGTTCAGAATAAAACGAGATCGCATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGTCCGAAGATAATCTTCGAGGACTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCGGGAATCGATGGTGGTGGAATATTCAAAGATTTTATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTGTTCAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATTTCCAATTTTTCCACTTTCTTGGCACTCTTCTTGCAAAGGCCATGTTTGAAGGAATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAACTTAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGCCATCTTATTTTTCTCAAGCATTATGATGGTGACATATCAGACTTGGAATTATACTTTGTGATAGTAAACAATGAATATGGTGAGCAAACAGAGGAGGAACTGCTCCCGGGGGGAAGGAATCTACGTGTTACTAATGACAATGTCATTACTTTTATTCATCTTGTAGCAAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCTCATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTTTGATATCAGGTTCACTGGAGAGCTTGGATGTCGATGATCTGCGGCAGCATACCAACTATGCAGGAGGCTATCACAGTGATCATTATGTGATTGAGATGTTTTGGGAGATTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTCTGAAGTTTGTGACAGGTTGCTCTCGTGGACCATTGCTGGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCTGCTGGTACTGCATCGGAGGAAGCTCTTGACCGATTACCAACGTCAGCTACTTGTATGAATCTGCTAAAGCTTCCACCTTATCAAAGTAAGGAGCAATTGGAAACCAAATTGCTTTATGCCATAAATGCCGATGCTGGTTTTGATTTAAGTTAA 3099 0.4117 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWHRQQNSAALKIQKCFRGRKDVRLEKSRLREQFYKTYGKYCQNVDRNSFCVNSDFLRQFLYFFKADNIDDFLVLVQICRLLQQFVHEDGDVVKHFAGVDYSSTGGLVNYRVKQLVYSCICALHQNRNQLKDQLLLSPEELDASAVPLLEVIVLLIDPKLPWSCKIVGYLFQNNALGLLREIILTGKGNAENYFPIGKGSSLERLLMVVICHIGQKPCVCSDINPRYSFASQIITIPFVWHLFPNLRQVFAAEGMSQHYIHHMATFGQNLINSLPKDMSNEVPSYACMLGNILETSGVALSQPACSFDMAVDLAAVTTFLMEALPSVRTSDNRESSMILDDDMIEDEAAAEVALDKKLEQQIYNAINPRFLLHLTNILFREISSVNALEYGPDDREVAAVGAACGFLYVTFNKLPMERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSEWLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQERPLSLKDIRSLIIILRQALWQLLWVNHTTNPNLLKSASASSASKRQSVEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVTENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAGFTRNRFRIKRDRILEDAYNQMSQLSEDNLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYDGDISDLELYFVIVNNEYGEQTEEELLPGGRNLRVTNDNVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLESLDVDDLRQHTNYAGGYHSDHYVIEMFWEILKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAAGTASEEALDRLPTSATCMNLLKLPPYQSKEQLETKLLYAINADAGFDLS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02515 1032 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1032 IPR044611 GO:0000209|GO:0061630
Adu01g02515 1032 Gene3D Hect, E3 ligase catalytic domain 914 1031 - -
Adu01g02515 1032 ProSiteProfiles HECT domain profile. 691 1032 IPR000569 GO:0004842
Adu01g02515 1032 SMART hect_3 689 1032 IPR000569 GO:0004842
Adu01g02515 1032 CDD HECTc 670 1030 IPR000569 GO:0004842
Adu01g02515 1032 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
Adu01g02515 1032 Gene3D Hect, E3 ligase catalytic domains 672 910 - -
Adu01g02515 1032 Pfam HECT-domain (ubiquitin-transferase) 727 1032 IPR000569 GO:0004842
Adu01g02515 1032 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Adu01g02515 1032 MobiDBLite consensus disorder prediction 1 22 - -
Adu01g02515 1032 PANTHER BNAC01G43970D PROTEIN 1 1032 - -
Adu01g02515 1032 SUPERFAMILY Hect, E3 ligase catalytic domain 663 1024 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02515 Adu-Chr1 94271445 94281229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02515 K10589 - gmx:100789933 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02515 01 94271445 94281229 Adu01g02515 01 94271445 94281229 ECH
Adu01g02515 01 94271445 94281229 Adu04g00800 04 11317478 11327667 PCT