Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00452 ATGACGCGTTCCAATGAGGAAACGAAGACGTACCAGGAATGGTTCAATTTGGCTGATTCAGATGGAGATGGTCGTATCAGCGGAAACGACGCTACGAAGTTCTTTGCTCTCTCCAAGTTGTCTCGCTCAGAACTCAAGCAACTCTGGTCTCTCGCCGATACCAAACGACAAGGCTATTTGGGATTCTACGAGTTCGTTACTGCAATGCAGCTGGTTTCGCTTGCACAAGCAGGGTACGAACTGAACTCAGATATACTTAAAACTGAGATTGATAAGGAAAATGTTAAACCTCCTGTGATGGAAGGACTTGAAGATCTAGTCGCAAAAACAAAGAGATTAATAATTAATTCTCCTCCTGAAATTAATGGGCCCGCTCAGCCTCAGTCAATTCCAAAAAACCCGTGGTTTACTTCAAAATCAAAATCTCTAAAGAGATTACCTCTCAATTCTGTAACATCAATAGTTGATGGCTTGAAGAAATTGTACGTTGAGAGATTAAAGCCATTAGAAGTCACTTATCGGTATAACGATTTTGCATCTCCATTGTTGACCAACAGTGATTTTGATGCTAAACCCATGGTCATGCTTCTCGGTCAATATTCCACGGGAAAAACAACATTTATAAAGCATTTGTTAAGATGTGATTATCCAGGAGCACATGTTGGACCAGAGCCCACAACTGATAGATTCGTTGTTGTCATGTCCGGGCCTGATGAGAGGAGTATTCCTGGAAATACCATTGCTGTTGATGCTGATATGCCTTTTGGTGGCCTAACGACATTTGGAGGGTCATTTTTATCGAAGTTCCAATGTTCTCAAATGCCGCATCCTCTACTGGATGAAGTAACATTTGTGGATACTCCTGGTGTCCTATCTGGAGAGAAGCAAAGGACTCAACGAAGCTATGATTTCACCGGTGTTGTTTCTTGGTTTGCTGAAAAATGTGATCTCATTCTTCTCCTATTTGATCCTCATAAACTTGATATTAGTGACGAGTTCAAACGTGTGATTTCATCTCTACGTGGTAATGAAGACAAGATCCGTGTGGTTTTAAATAAGGCAGATCAAGTTGATACTCAACAACTTATGAGAGTTTATGGAGCGTTGATGTGGTCATTGGGGAAAGTGCTAAACACTCCTGAAGTTTCACGTGTATATATTGGCTCGTTTAATGATAAGCCTATCGATGAAAGCTTTGCTGGTCCTTTAGGGAGGGATCTCTTTGAGAAGGAACAAAATGATTTGCTTGCAGATTTGGTAGATATTCCAAAGAAGGCTTGCGATCGCAAGATAAATGAATTTGTCAAACGTGCTAGATCTGCTAAAATTCATGCATACATAATTAGTCATCTCAAGAAGGAGATGCCTGCAATCATGGGCAAAGCCAAGGCTCAACAAAGGCTCATTGATAAACTTGATGAGGAATTTGCAAAGGTTCAACGAGAGTATCATCTACCTTCTGGAGATTTTCCTAACGCTGATCACTTCAGAGAAGTTTTAAGTAGTTATAACATTGATAAATTTGAAAAACTGAAGTCTAGAATGATTCAAGCTGTAGATGATATGCTTGGATATGAAATTCCAGAGCTTTTAAAAAAATTCAGAAATCCTTATGATTAA 1620 0.3975 MTRSNEETKTYQEWFNLADSDGDGRISGNDATKFFALSKLSRSELKQLWSLADTKRQGYLGFYEFVTAMQLVSLAQAGYELNSDILKTEIDKENVKPPVMEGLEDLVAKTKRLIINSPPEINGPAQPQSIPKNPWFTSKSKSLKRLPLNSVTSIVDGLKKLYVERLKPLEVTYRYNDFASPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFGGLTTFGGSFLSKFQCSQMPHPLLDEVTFVDTPGVLSGEKQRTQRSYDFTGVVSWFAEKCDLILLLFDPHKLDISDEFKRVISSLRGNEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDESFAGPLGRDLFEKEQNDLLADLVDIPKKACDRKINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQRLIDKLDEEFAKVQREYHLPSGDFPNADHFREVLSSYNIDKFEKLKSRMIQAVDDMLGYEIPELLKKFRNPYD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00452 539 PANTHER EH DOMAIN 13 537 - -
Adu04g00452 539 SMART eh_3 4 95 IPR000261 GO:0005515
Adu04g00452 539 Gene3D - 1 100 - -
Adu04g00452 539 ProSiteProfiles EF-hand calcium-binding domain profile. 42 75 IPR002048 GO:0005509
Adu04g00452 539 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 188 423 IPR030381 GO:0005525
Adu04g00452 539 Coils Coil 462 482 - -
Adu04g00452 539 CDD EHD 193 437 - -
Adu04g00452 539 PANTHER CALCIUM-BINDING EF HAND PROTEIN 13 537 - -
Adu04g00452 539 Pfam 50S ribosome-binding GTPase 194 353 IPR006073 GO:0005525
Adu04g00452 539 Gene3D - 194 422 IPR027417 -
Adu04g00452 539 CDD EH 11 77 IPR000261 GO:0005515
Adu04g00452 539 Pfam Domain of unknown function (DUF5600) 429 530 IPR040990 -
Adu04g00452 539 Pfam Cytoskeletal-regulatory complex EF hand 5 72 IPR000261 GO:0005515
Adu04g00452 539 Gene3D - 158 530 - -
Adu04g00452 539 Pfam N-terminal EH-domain containing protein 157 189 IPR031692 -
Adu04g00452 539 ProSiteProfiles EH domain profile. 7 101 IPR000261 GO:0005515
Adu04g00452 539 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Adu04g00452 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 461 IPR027417 -
Adu04g00452 539 SUPERFAMILY EF-hand 4 87 IPR011992 -
Adu04g00452 539 SMART efh_1 10 38 IPR002048 GO:0005509
Adu04g00452 539 SMART efh_1 44 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00452 Adu-Chr4 5353125 5357424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00452 6 539 EF-hand Containing Proteins AT4G05520 78.652 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00452 K12483 - gmx:100805498 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00452 04 5353125 5357424 Adu04g00452 04 5353125 5357424 ECH
Adu01g02836 01 98594440 98599846 Adu04g00452 04 5353125 5357424 PCT