Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03857 ATGACATTGTTGCTCCCTCCACCTTCTTCTCTCTCTTCTTCCACCATCATCAAGAGTTCCTCTTGGTCTTGGTCGGTATCCCACAAGCTCCACGCTCCGAAGTTTGAAGCTTTTGCCGCAAACACTGATACCCTCGAGCCCCTTCAATCCTCTGATGTATTATTCAGCAAGATTTTCCCCATCAACAGAACTGAATTGTTGGAGGGAAAGATCTTTGTTAGATTGGATCAGGGGAAAGACTTGAGAAATTGGGAGCTAACTGTGGGTTGCAATCTACCCGGGAAATGGGTTCTTCACTGGGGAGTTTCCCGCTTAGATGATGTTGGAAGTGAATGGGATCAGCCTCCTCGTGATATGATACCCCCAGGATCTGTTCCTATAAAGGACTATGCAATTGAGACACATTTGAAGAAATCAACGTCATCTTCTGAAGGAGATGATTTTCATGAGGTCAAGATTGATCTTACATCCAACAGTGAAATCTCCGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCTTGGTTTCAACACAAAGGAAGAGATTTCAAGGTTCCTCTAGTCAGCTACATGAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGCTTTAGTTTTTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTTCTCAAGTCAGAGGCAATGCATAACAACGATCAAAATGACGGCAAGCAATCCAGTGAGCCAAAACAAGGAAATAGTCAACTAGAAGGCTTCTATGTAGAGCTGCCAATTACCAAAGAAGTTACTGTCAGCAACTCTATCAGTGTCTCCGTTAAGAAATGTGCTGAGACAGCTAACAATCTTTTATATTTAGAAACAGATATACCTGGAGAGGTTCTCCTTCATTGGGGAGTTTGCAAAGATGATATGAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCAGCAGAAACAGTAGCATTTAAGAACAGAGCTTTGAGAACTAAATTACAGTCAAGGGACAGCGGGAAGGGGAATTCAGCAGAAATCTCTGTGGGAGAAGAATTTTCGGGATTTCTTTTTGTTGTTAAGCTAGACGACAATAATTGGTTGAATGACAAGGGAAATGACTTTTATATCCCTCTGTCAAGTTCTAGTAACTCACTTACTAGCAAAAGAAAGGATCAATCAGAAGCTGTCCAGAGGGAAGTGACAAAAGTGGAAAGTCAGAAGGAATCTACCTCTACGTTTACCGATGGAATAATCAGTGAAATAAGGCATTTAGTGACAGACATTTCCTCTGAGAAGACTCGAAAAACAAAATCCAAAGAAGCACAAGAAAGTATTCTTCAAGAAATCGAAAGACTTGCTGCCGAAGCTTATAGTATTTTTAGGACCAATGTTCCAACTTTCTCAGAGGAAACCATTGTGGAACCTGAGGCGGTGGCTGCTGTAGAATCAGAGACATTGGTGTCACCTGAGGCACCAAAAATATCCTCAGGGACAGGCACTGGTTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTGAAAGAGAAAGCTGCAGAACTATCATCATTTGGTTTTACTGTAGTTTGGTTACCACCACCTACGGAGTCTGTGTCCCCTGAAGGATACATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAAACATTGATGAACTGAAGGATGTGGTGAAAAGCTTTCACAGAGCTGGAATCAAAGTACTTGGAGATGTCGTTTTGAATCATCGATGTGCCCACTTTAAGAACCAGAATGGTATTTGGAACATATTTGGAGGTCGTCTCAACTGGGATGATCGAGCAATTGTTGCTGATGATCCACATTTTCAGGGTAGAGGCAACAAAAGTAGTGGAGATAATTTCCATGCTGCTCCGAACATTGATCATTCACAGGAATTTGTGAGAAAGGATATTAAAGAATGGTTACTTTGGTTGAGGAAAGAAATTGGCTATGATGGGTGGAGGCTTGACTTTGTGAGAGGATTTTGGGGAGGTTATGTAAAGGATTACCTCGAAGCAAGTGAACCTTACTTTGCTGTTGGAGAGTACTGGGATTCCCTCAGTTATACATATGGCGAGATGGATCATAATCAAGACGCGCATAGGCAGCGGATCATTGACTGGATCAATGCTACCAATGGTACTGCGGGGGCATTCGATGTTACGACCAAAGGGATCCTTCACTCTGCATTGGATAAATGTGAATATTGGCGATTGTCAGATCAGAAGGGAAAACCCCCTGGAGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGCTCTACCCAGGGTCATTGGAGATTTCCAAGCGGAAAAGAGATGCAAGGATATGCATACATCCTTACTCACCCAGGAACTCCATCGGTGTTCTTTGATCACATATTCTCTCATTACAAGAGTGAAATATCCATGCTTTTGTCTGTCCGGCAACGGAACAAGCTACACTGCCGGAGTATAGTAAAAATATGTAAGGCAGAAAGGGATGTTTATGCTGCAATCATAGATGATAAAGTTGCTATGAAGATTGGACCTGGTCATTTTGAGCCACCAAGTGGATCCCAGAAATGCCTCTATGCTAATGTCTTGGAGAGTGAAGCGTTTTGGCAGGACCAACTAAGAATGTTTGATTCTTACTGGAGAGAAAGAGCCGAGGTTGCTAGGCAGGAAAACGAGAAAGCCTATTTCCCTGATCCCTTTGCCATCTCCGGCAACTTCACCTCTGCCATTAGCTGGGACATTCTTGGAAGGAATGGAGGAAGAAGGTTGTTGAAAGGAAAGAACAAAGGAGCTCCATGTGTGGCGAGCAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCTGATAACCGCCAAAAGCTTGCGAATTGTGTTATGGGATTCGGCAGAAACACGTACGGAGGAAAAGGAGGAAAATACTACGTGGTCACCGACCCTTCCGACGATGAGTTGCTGGCTCCCAAGCCCGGCACTCTTCGCCATGCAGTCACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGCAGCATGGTCATCACCCTCCAGCAAGAGCTCATCATGGCTGGCAACAAGACCATTGATGGAAGAGGCTTTGATGTCCACATTGCACACGGTGCTGGCATCACCATCCAGTTCATCAAGAATGTCATCATCCATGGCATCAAGGTCTACAACATCGTCGTCAAGGACGGTGGCATGATCAGGGACTCCGAGACTCATTACGGCTTCAGGACTAAGAGTGATGGTGATGGTATCTCCATCTTTGGCTCTAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCACTACACTGACCACAACGAGGTGATGCTTTTTGGAGCGAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGAGCCAGATATGGTTTCGTCCATATTGTGAACAATGATTATACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCCTGATCAGCGAGGGTAACAGGTTCATCGCCCCCCCAAACCGGTTTGCCAAGGAGATCACCAAGAGAGAATACACAGAAGAAAAAATATGGAAGGACTGGCAATGGAGATCAATCAATGATGAGTACTTGAATGGAGCGTTCTTCATTCAATCAGGACCTGAACTGAAGAACAGGCCATTCTCAACAAAGGATATGATCACAGCCAAGCCAGGAACATATGTTGGACAGCTAACACGCTATGCGGGTGTTCTTCCATGCAGAATTGGACATCCCTGCTAG 3909 0.4454 MTLLLPPPSSLSSSTIIKSSSWSWSVSHKLHAPKFEAFAANTDTLEPLQSSDVLFSKIFPINRTELLEGKIFVRLDQGKDLRNWELTVGCNLPGKWVLHWGVSRLDDVGSEWDQPPRDMIPPGSVPIKDYAIETHLKKSTSSSEGDDFHEVKIDLTSNSEISAINFVLKDEETGAWFQHKGRDFKVPLVSYMKEDANIIGPKKGFSFWPGALGQISNILLKSEAMHNNDQNDGKQSSEPKQGNSQLEGFYVELPITKEVTVSNSISVSVKKCAETANNLLYLETDIPGEVLLHWGVCKDDMRRWEVPPAPHPAETVAFKNRALRTKLQSRDSGKGNSAEISVGEEFSGFLFVVKLDDNNWLNDKGNDFYIPLSSSSNSLTSKRKDQSEAVQREVTKVESQKESTSTFTDGIISEIRHLVTDISSEKTRKTKSKEAQESILQEIERLAAEAYSIFRTNVPTFSEETIVEPEAVAAVESETLVSPEAPKISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELSSFGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDVVKSFHRAGIKVLGDVVLNHRCAHFKNQNGIWNIFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDIKEWLLWLRKEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSALDKCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFFDHIFSHYKSEISMLLSVRQRNKLHCRSIVKICKAERDVYAAIIDDKVAMKIGPGHFEPPSGSQKCLYANVLESEAFWQDQLRMFDSYWRERAEVARQENEKAYFPDPFAISGNFTSAISWDILGRNGGRRLLKGKNKGAPCVASNPIDRCWRCDPHWADNRQKLANCVMGFGRNTYGGKGGKYYVVTDPSDDELLAPKPGTLRHAVTRTEPLWIIFSRSMVITLQQELIMAGNKTIDGRGFDVHIAHGAGITIQFIKNVIIHGIKVYNIVVKDGGMIRDSETHYGFRTKSDGDGISIFGSSNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARYGFVHIVNNDYTHWEMYAIGGSKNPTLISEGNRFIAPPNRFAKEITKREYTEEKIWKDWQWRSINDEYLNGAFFIQSGPELKNRPFSTKDMITAKPGTYVGQLTRYAGVLPCRIGHPC 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03857 1302 SUPERFAMILY Pectin lyase-like 953 1293 IPR011050 -
Adu03g03857 1302 Gene3D Glycosidases 497 830 - -
Adu03g03857 1302 Pfam Pectate lyase, N terminus 892 940 IPR007524 GO:0030570
Adu03g03857 1302 PANTHER ALPHA-AMYLASE 62 872 - -
Adu03g03857 1302 SUPERFAMILY Glycosyl hydrolase domain 831 871 - -
Adu03g03857 1302 Pfam Alpha-amylase C-terminal beta-sheet domain 828 870 IPR012850 GO:0004556|GO:0005509|GO:0005975
Adu03g03857 1302 SMART alpha-amyl_c2 827 887 IPR012850 GO:0004556|GO:0005509|GO:0005975
Adu03g03857 1302 SMART amb_all 1027 1224 IPR002022 -
Adu03g03857 1302 SUPERFAMILY (Trans)glycosidases 496 814 IPR017853 -
Adu03g03857 1302 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 62 872 - -
Adu03g03857 1302 Pfam Pectate lyase 1041 1218 IPR002022 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1099 1120 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 999 1024 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1243 1267 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 975 992 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1273 1296 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1179 1198 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1201 1220 IPR018082 -
Adu03g03857 1302 PRINTS Pollen allergen Amb family signature 1035 1051 IPR018082 -
Adu03g03857 1302 Gene3D - 952 1295 IPR012334 -
Adu03g03857 1302 Gene3D - 831 879 IPR013780 -
Adu03g03857 1302 SMART aamy 497 834 IPR006047 GO:0005975
Adu03g03857 1302 MobiDBLite consensus disorder prediction 376 402 - -
Adu03g03857 1302 MobiDBLite consensus disorder prediction 385 399 - -
Adu03g03857 1302 Pfam Alpha amylase, catalytic domain 524 779 IPR006047 GO:0005975
Adu03g03857 1302 CDD AmyAc_arch_bac_plant_AmyA 498 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03857 Adu-Chr3 127368505 127380243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03857 9 871 Glycoside Hydrolase AT1G69830 66.590 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03857 K01176 - gmx:100788193 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03857 03 127368505 127380243 Adu03g03857 03 127368505 127380243 ECH
Adu03g03857 03 127368505 127380243 Adu05g01726 05 37923651 37931741 PCT