Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02280 ATGGTGGAAGAAAACACAACACCAACATCAACAACAAAACATGATTTTTTCGAAACCCAAGCCGTCTTGGACTTGAAGCGTTGGTTCCAAGCAATCATATCCTCACACAAGACCCTCTTTACACTCCTATGGCTGGCGGCGTTCACCTCCGCCTTCCTGTGGCAGAGGGATGCCGTTAGTGGGTTGGTGGTGATGCACGGTGGCGGTGAGTCTCTTAAGAAGAGTGAAAGTTCATTGTTGTATCCTAAGCTGAGGCCCGTGGGCTTCAGCTTAGTGGATTTCGGTGGCGTTGGCGACGGCGTTACCATGAACACTAAGGCGTTTGAGAGGGCGGTTTCAGAGATTTCTAAGTTGGGAGAGAAGGGTGGTGGGCAGCTGAATGTGCCCCCTGGTAGGTGGCTCACTGCACCTTTTAATCTCACCAGTCATATCACTCTTTTTCTTCATCAAGATGCTGTCATTCTTGGAGTTCAGGATGAAAAGTACTGGCCACTGGTGCCTGCATTGCCTTCATATGGATATGGAAGGGAGCATCCTGGCCCTCGTTACACCAGCTTGATCCATGGCCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGCAGAAGGTTCTGAACCATACAAGGGGTCCACTGGTTCAGATCTTATGGTCTAGTGACATTCTTATAACTAACATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATACGATTGCAAGAATGTTACAATCAAAAACCTTACAATTTTGGCTCCTGTGTATCGTGCACCAAATACTGATGGCATTGATCCTGGAAAAACAGATTCATGTGAAGATATGTTGATAGAGAACTGTTACATAAGCGTGGGAGATGATGCAATTGCCATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCCGGCATCTCAATAGGCAGCGAAATGTCCGGCGGTGTATCGAACGTGACGGTGGAGAACATCCTTGTATGGAAATCCAGGCGTGCTATTCGGATCAAGACAGCGCCGGGAAGAGGCGGCTTCGTGCGCCAAATATCTTACAAGAATCTGACCTTTGAGAATTGCAGAGTTGGAATTGTCGTCAAAACAGACTACAACCAACACCCTGACGCCGGATACGACCCGAAAGCGCTTCCTCTTCTCGAGGACATAAGCTTCACGGGCGTCCGGGGCCAGGCAGTTCGAGTGCCGGTACGGATTCAAGGCAGCCAGGACATTCCTGTTAGAAATGTGACTTTTAAGGACATGTTTGTCGGATTAATTTCGAAGAGGGTGAAGAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCGTGGTCAAGTAATAGGGACTATCTTCCCTGCCCCTTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAGCTAGTTAAGCATGCCGTATCATGGAATGTCACAGATATAGATTACCAAATATGA 1545 0.4641 MVEENTTPTSTTKHDFFETQAVLDLKRWFQAIISSHKTLFTLLWLAAFTSAFLWQRDAVSGLVVMHGGGESLKKSESSLLYPKLRPVGFSLVDFGGVGDGVTMNTKAFERAVSEISKLGEKGGGQLNVPPGRWLTAPFNLTSHITLFLHQDAVILGVQDEKYWPLVPALPSYGYGREHPGPRYTSLIHGQNLTDVVITGHNGTINGQGQTWWTKYLQKVLNHTRGPLVQILWSSDILITNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYRAPNTDGIDPGKTDSCEDMLIENCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWKSRRAIRIKTAPGRGGFVRQISYKNLTFENCRVGIVVKTDYNQHPDAGYDPKALPLLEDISFTGVRGQAVRVPVRIQGSQDIPVRNVTFKDMFVGLISKRVKKKKHIFQCAFVRGQVIGTIFPAPCENFDQYNEQGQLVKHAVSWNVTDIDYQI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02280 514 PANTHER PECTIN LYASE-RELATED 29 512 - -
Adu03g02280 514 SUPERFAMILY Pectin lyase-like 80 487 IPR011050 -
Adu03g02280 514 Gene3D - 70 473 IPR012334 -
Adu03g02280 514 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 29 512 - -
Adu03g02280 514 Pfam Glycosyl hydrolases family 28 184 456 IPR000743 GO:0004650|GO:0005975
Adu03g02280 514 SMART pbh1 321 343 IPR006626 -
Adu03g02280 514 SMART pbh1 349 370 IPR006626 -
Adu03g02280 514 SMART pbh1 287 308 IPR006626 -
Adu03g02280 514 SMART pbh1 256 283 IPR006626 -
Adu03g02280 514 SMART pbh1 378 399 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02280 Adu-Chr3 49742972 49747122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02280 30 514 Glycoside Hydrolase AT3G42950 69.857 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02280 - - adu:107479176 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02280 03 49742972 49747122 Adu03g02280 03 49742972 49747122 ECH
Adu01g01982 01 86843444 86847282 Adu03g02280 03 49742972 49747122 PCT