Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01982 ATGGTGGACACCTCAACGCTTGGGCGCTTCCACCACCAAAGACTCGAATTCAAGCGCTGTCTCCCCGCAATCATAACCTCCCACAGAACCCTCTTCACCGTCCTCTGGATCGCCGCCTTCGCCTCCGTCTTCATCTGGCAGAGGAACGTTGTTGTCGGAGGCTTCTTCCTCTTCGGTCGGACCCTCCCGCCGCGCCCGATTCCCAAGCTGAGGCCGGTGGCTTTCAACTTGACGGATTTCGGGGGTGTCGGCGACGGTGTCACCCTCAACACTGAGGCATTTGAGAGGGCCGTTTCTGCGATTTCCAAGTTGGGGAAGAAAGGTGGTGGCCAGCTCAATGTGCCTCCCGGTCGCTGGCTTACTGCGCCCTTCAATCTCACCAGCCATATGACACTTTTTGTAGCTCAAGATGCTGTTATTCTTGGACTTGATGATGAGAAGTATTGGCCACTGATGCCACCATTGCCATCGTATGGGTATGGGAGGGAGCATCCTGGACCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAACCTGGTGGAAAAAGTATCGTCAAAAACGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTCATTGCTGATATTACTTTACGCGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATATCACTATAAGAAATGTTACAATATTGGCTCCTGTAACTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTACAGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCATCCATGAATATAATGATCCGGAATCTAGTTGTTCGCTCCGTGGTCAGTGCTGGCGTTTCAATAGGCAGTGAGATGTCTGGTGGGGTGTCCAATGTGACTGTGGAGAATCTTCTTGTATGGGGTTCTAGGCGTGCCGTGAGGATTAAAACGGCCCCTGGGCGAGGCGGATTTGTTCGCCATATTACTTACCGGAATCTAACATTTGATAACGTCCGTGTTGGAATAGTAATTAAGACAGATTACAACGAGCACCCTGATGATGGATATGACCCTAGTGCACTTCCTGTACTCAGAGACATAAGTTTCACCACCGTCCATGGCCAGGGTGTTCGTGTGCCAGTACGAATTCATGGCAGCGAAGAGATCCCAGTGAGAAATGTGACGTTTCGGGACATGTCAGTTGGCCTCACTTACAAGAAGAAACATATCTTTCAGTGTGCCTTTGTCCAAGGGCGCGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCATGGACAGCTAGTTAAGCATTCTGCTTCCCAGAATGTAACAGACATAGATTATGATTTTTGA 1482 0.4825 MVDTSTLGRFHHQRLEFKRCLPAIITSHRTLFTVLWIAAFASVFIWQRNVVVGGFFLFGRTLPPRPIPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFVAQDAVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMWSSDIVIADITLRDSPFWTLHPYDCKNITIRNVTILAPVTEAPNTDGIDPDSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSVVSAGVSIGSEMSGGVSNVTVENLLVWGSRRAVRIKTAPGRGGFVRHITYRNLTFDNVRVGIVIKTDYNEHPDDGYDPSALPVLRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYNEHGQLVKHSASQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01982 493 PANTHER PECTIN LYASE-RELATED 21 491 - -
Adu01g01982 493 PANTHER POLYGALACTURONASE-RELATED 21 491 - -
Adu01g01982 493 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Adu01g01982 493 SMART pbh1 422 443 IPR006626 -
Adu01g01982 493 SMART pbh1 304 326 IPR006626 -
Adu01g01982 493 SMART pbh1 242 269 IPR006626 -
Adu01g01982 493 SMART pbh1 361 382 IPR006626 -
Adu01g01982 493 SMART pbh1 332 353 IPR006626 -
Adu01g01982 493 SMART pbh1 270 291 IPR006626 -
Adu01g01982 493 Gene3D - 63 455 IPR012334 -
Adu01g01982 493 SUPERFAMILY Pectin lyase-like 67 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01982 Adu-Chr1 86843444 86847282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01982 9 492 Glycoside Hydrolase AT1G19170 77.778 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01982 - - rcu:8259080 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01982 01 86843444 86847282 Adu01g01982 01 86843444 86847282 ECH
Adu01g01982 01 86843444 86847282 Adu03g02280 03 49742972 49747122 PCT