Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02039 ATGACAACACTAATAACTAAGGTCCCTATTGGGTTTCTTTCTCTTCTCTTAATTATTACTATAGCTACCAAAGCTGCGGCTGGTAACTTCTATCAAGACTTTGAAGTAACATGGGGTGATAACCGTGCTAAGATCTTTAACGGTGGCCAGCTTCTTACACTGTCCTTGGACAGAGCCTCCGGCTCCGGATTTCGCTCCAAGAACGAGTATTTGTTTGCCAAACTTGACATGCAAATCAAACTCGTTCCTGGTAACTCCGCTGGCACCGTTACAACATACTATCTATCTTCGTTGGGTGGGACACATGACGAAATAGACTTTGAATTTCTGGGGAACTTGAGTGGAGATCCGTACATTCTTCACACAAACGTATTCACGCAAGGGAAAGGCAACAGAGAACAGCAGTTCTATCTATGGTTCGACCCCACCGCCGACTTCCACACCTATTCCATTCTTTGGAATCCTCACAACATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTTAGAATCAAGAGGGGTCCCATTCCCAAAGAACCAACCCATGAGACTATACTCAAGCCTTTGGAATGCTGATGACTGGGCCACAAGGGGTGGGCTTGTGAAGACAGATTGGGCCCATGCCCCATTCACTGCCTCATACAGAAACTTCAATGCACCACCAGCCCAATCATGGATGGGCCAATCTCTTGATTCAACAGGCCTTGCAAGAATCCATTGGGTCCAAAGGAATTACATGATTTACAATTATTGCACTGATCTCAAACGCTTCCCACAAGGGCCTCCTCTTGAATGCTCACTTGCATGA 819 0.4579 MTTLITKVPIGFLSLLLIITIATKAAAGNFYQDFEVTWGDNRAKIFNGGQLLTLSLDRASGSGFRSKNEYLFAKLDMQIKLVPGNSAGTVTTYYLSSLGGTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTADFHTYSILWNPHNIIFSVDGTPIREFKNLESRGVPFPKNQPMRLYSSLWNADDWATRGGLVKTDWAHAPFTASYRNFNAPPAQSWMGQSLDSTGLARIHWVQRNYMIYNYCTDLKRFPQGPPLECSLA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02039 272 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 271 IPR013320 -
Adu03g02039 272 CDD GH16_XET 25 269 IPR016455 GO:0010411|GO:0016762|GO:0042546
Adu03g02039 272 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 226 269 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Adu03g02039 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12 271 - -
Adu03g02039 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 12 271 IPR044791 GO:0004553
Adu03g02039 272 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 218 IPR000757 GO:0004553|GO:0005975
Adu03g02039 272 Pfam Glycosyl hydrolases family 16 31 210 IPR000757 GO:0004553|GO:0005975
Adu03g02039 272 Gene3D - 16 271 - -
Adu03g02039 272 PIRSF EndGlu_transf 1 272 IPR016455 GO:0010411|GO:0016762|GO:0042546
Adu03g02039 272 ProSitePatterns Glycosyl hydrolases family 16 active sites. 104 114 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02039 Adu-Chr3 38887570 38890339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02039 6 272 Glycoside Hydrolase AT4G25810 67.018 1.58e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02039 K14504 K08235 gmx:100778237 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02090 01 88122546 88124175 Adu03g02039 03 38887570 38890339 PCT