LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g02090	ATGCACATCATCGATCGCTCATATACTTCTCTTGGCTTCTTTTGCTTCCTTCTCTCTCTCTATACATATTTGCCTCCTATTTTCCAACCAAATCAAATTAAGGGAACCATAATTAATATGGGGATTGAGGTACTTATTATTAATATTGTTCTCCTTATAGGGTTTGCGGTTGCTGCATCCGCAGGTAACTTCAACCAAGACTTTGAAATTACATGGGGTAATGACCGTGCCAAAGTCCTCAACAACGGACAGCTTCTGACGCTGTCCCTTGACAAGGCCTCCGGCTCCGGCTTCCGTTCCCGGAACGAGTACCTGTTTGGAAAGATCGACATGCAGCTTAAACTTGTTCCTGGTAATTCAGCAGGCACAGTCACAGCCTATTATCTAAGTTCACTTGGTGACACTCACGATGAGATAGACTTTGAATTTCTGGGGAACTTGAGTGGTGAACCATACACTCTGCACACGAATGTATTCACGCAAGGGAAAGGCAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCATACGTATTCTCTTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTGGGAATCAAAAGGAGTTCCATTTCCCAAGAATCAAGCAATGAGGATATACTCAAGTCTATGGGACGCAGAAGATTGGGCCACAAGGGGTGGGCTTGTGAAGACTGATTGGACCCAAGCCCCATTCACAGCCTCATACAAAGGCTTCAATGCACAAGCTTGTGTTTGGACCTCTTCTTCAGGCTCCTCTTGTTCTTCAAAACAAGGCCAATCATGGTTCACTCAGTCACTTGACTCAACTGGGCAAGCAAGAATCCAGTGGGTTCAGAAGAACTACATGATCTACAATTACTGCACTGATACCAAACGATTCCCACAAGGCCTTCCTCCTGAATGCACCCTTGCATGA	966	0.4513	MHIIDRSYTSLGFFCFLLSLYTYLPPIFQPNQIKGTIINMGIEVLIINIVLLIGFAVAASAGNFNQDFEITWGNDRAKVLNNGQLLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGEPYTLHTNVFTQGKGNREQQFHLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNWESKGVPFPKNQAMRIYSSLWDAEDWATRGGLVKTDWTQAPFTASYKGFNAQACVWTSSSGSSCSSKQGQSWFTQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTLA	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g02090	321	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	42	320	-	-
	Adu01g02090	321	SUPERFAMILY	Concanavalin A-like lectins/glucanases	63	320	IPR013320	-
	Adu01g02090	321	Gene3D	-	50	320	-	-
	Adu01g02090	321	CDD	GH16_XET	59	318	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Adu01g02090	321	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	42	320	IPR044791	GO:0004553
	Adu01g02090	321	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	58	252	IPR000757	GO:0004553\|GO:0005975
	Adu01g02090	321	Pfam	Glycosyl hydrolases family 16	65	244	IPR000757	GO:0004553\|GO:0005975
	Adu01g02090	321	PRINTS	Glycosyl hydrolase family 16 signature	96	114	IPR008264	GO:0004553\|GO:0005975
	Adu01g02090	321	PRINTS	Glycosyl hydrolase family 16 signature	154	167	IPR008264	GO:0004553\|GO:0005975
	Adu01g02090	321	PRINTS	Glycosyl hydrolase family 16 signature	172	189	IPR008264	GO:0004553\|GO:0005975
	Adu01g02090	321	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	138	148	IPR008263	GO:0004553\|GO:0005975
	Adu01g02090	321	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	275	318	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Adu01g02090	321	PIRSF	EndGlu_transf	31	321	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g02090	Adu-Chr1	88122546	88124175	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g02090	42	321	Glycoside Hydrolase	AT4G25810	72.183	8.95e-153	428

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g02090	K14504		-	gmx:100807063	499.204

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu01g02090	01	88122546	88124175	Adu03g02039	03	38887570	38890339	PCT