LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g02663	ATGAGAACAGGAAGTTGTTCTGTGCAACAAGGGCTAACCCCAGAAGCTGCAAGCATAGTGAAGCAGGCCGTGACGCTTGCAAAGCGTCGCGGCCATGCTCAAGTGACGCCACTTCACGTGGCGAACACTATGCTTTCAGATTCTAACGGTTTACTAAGAACAGCTTGTCTCCAGTCTCATTCGCATCCTCTCCAGTGCAAGGCGTTGGAGCTCTGCTTCAACGTTGCACTGAATAGGTTGCCGGCTTCAACCTCGAGCCCCATGTTGGGCAACCATCACCATCCCCACCACTCTCAGTGTCCTTCGATTTCAAACGCCATGGTAGCTGCTTTCAAGCGCGCACAAGCTCACCAGCGACGCGGATCCATTGAGAACCAACAACAACCGTTGTTGGCCGTGAAGATTGAGCTTGAACAACTCATAATCTCAATCTTGGATGACCCTAGTGTTAGTAGGGTTATGAAAGAAGCAGGGTTTTCTAGCACACAAGTCAAGAGCAATGTAGAACAAGCTGTTTCTCTAGAAATATGCTCTCAAAACAACAACACCAACAACAAGAATAACAACAAGTCAAAGGATCATAAAAGTGATGGAGATGACAACAACAACAACAACAACAACAAGGTAGTGTTGGATCCGGTAAGAGATGAAGATGTTTCAAGTGTGATAGATAATTTGGTGAGTCAAAGAAGAAGAACAACCGTGATTGTTGGTGAGTGTGTGAAAACTCTTGAAGGTGTAGTTAGAAGGGTGATGGAGAAGTTTGAGAAAGGACAAGTTAGTGAATCCCTTAGAGGTATCAAGTTTCTACCTCTTTCTCTTTCTTCCTTCTCAAATCTTTCAAGATTAGAGGTTGAACAAAAGATTGAAGAGCTTAATAGGAGTCTTGTTAATAACGATAACAATGATAGCAATAAAGGGTGTGTTTTGTATCTTGGAGATCTCAAATGGGTTTTTGATTATTATAGAGACCAAGGAATGAGTAGTAGGGTTTGTTATAGCCCTGTGGATCACATGATAATGGAGATTGCAAAGATGGTGAGTAGTAATAATAATAATAATAATGGAAGGTTTTGGTTGATGGGTATTGCAACTTTCCAAGCTTATATGAGATGCAAAAATGGACATCCATCAATGGAGAATCTTTGGGGTCTTCACCCCATTACAATCCCTGCTGGAAGCTTGAGTTTGAGCCTCATCACTGACAGTGGTCTACAAAATCAAGCAATAACAAACTCTAAAGCTGACAATAGAACTAGCTGGCTATTACTTGATCAAGAAGGAAGAGGAGGAGGAGTGAGGGGTGATATTAATAATGATCTTGGAACCTTCTTGGAACCTTCTTCTTCTTCAGCTAAGGTAGTTGAGAACGAAGTTCGAAGCTTGCAAAGTATGAATAGTACTTGTAACAGTGATTCTTCAAGTTCTCTCCTTCCTGCATGGCTTCAACAGTACAAGAATGAGAATAAAGGACTCTCCTCTTCTAATCATCAGGATGTTCAAGTGGGAGAGGTTTCCAAAACTTGGAACAATGCAACTCAAAAACAACCCTACACTATTTGTGATCAAACTCTCACATTATCATCACCTTCTTCATCCAATACTTCTAGTGTTTTTTTCTATGATCACCACCCAAATCCTAACAATATCAACTATATTTGGAATTCAGAAAATCGTAGTAACCGCAATCACAGCCACAGCCAGAACCACAACCAGAATAATGATGAACCCGCTTTGCGAGTTTACATTAGCAACAAAGAAATTGTAGATCATAGTCCATTAACTATCTCACCATTATCAAATCCAAGTTCTTCAAACCCTAATTCCACTTCTTCAAGTGGTGTCATGGAAGCAATGGAGTATGTGAACAACAAATTCAAAGAGCTCAACTTGGAGAACCTAAAAAACCTTTGCAATGCTTTGGAGAACAAAGTTCCATGGCAGAAAGAGATACTACCCGAAATCGCGAGCACCATTTTGCAATGCCGTTCCGGAACAAGGCAAAGAAGGAAAGGAAATAACAACAACAACAATGTGATGATGAAAGAAGAAACATGGTTGTTCTTCCAAGGTGTTGATCTTGAAGCCAAAGAGAAGATAGCAATGGAATTGGCTAGGGTTGTTTTTGGTTCATCAAAGGAAAACTTCATCTCAATATCAATGAGTAGTTTTTCATCATCAACAAGAGCTGATTCATCAATTGAGGACAACAATTCTTGCAGGAACAAGAGATCAAGGGAAGATCCAAGTTGTAGTTACATTGCGCGATTCGGGGAAGCAGTGTGTTCTAACCCTCATAGGGTTTTTCTTGTTGAGGACATTGAACAAGCTGATTATTTCTCTCAACTTGGTTTCAAGAGAGCAATGGAGAGAGGAAAGGTTGAAGATTCAAATGGTGAAGAGGTTTCACTTTGTGATGCTATCATCATTTTGAGTTGTGAGAGTTTTAGTTCAAGATCAAGGGCTTGTTCTCCATTGACAAGACAAAAATCTTGTGAAGGTTCTTCATCAAGAGAAGACAACACTAATCATAATAATAATAATGATTATGGTGATGGTGTTGCTACTTTGGAGGAGATAAGTCCTTGTGTTTCTTTGGATTTAGATTTGAATATTTCCATCGATGATGATGAATGCAATGATGATCATGATGATCATGGATCCGTGGATGAAATTGGACTTCTTGAATCTGTGGACGGAAAAGTTTTCTTCAAAATTCAGGATTTGTAA	2730	0.4007	MRTGSCSVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSDSNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSPMLGNHHHPHHSQCPSISNAMVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMKEAGFSSTQVKSNVEQAVSLEICSQNNNTNNKNNNKSKDHKSDGDDNNNNNNNKVVLDPVRDEDVSSVIDNLVSQRRRTTVIVGECVKTLEGVVRRVMEKFEKGQVSESLRGIKFLPLSLSSFSNLSRLEVEQKIEELNRSLVNNDNNDSNKGCVLYLGDLKWVFDYYRDQGMSSRVCYSPVDHMIMEIAKMVSSNNNNNNGRFWLMGIATFQAYMRCKNGHPSMENLWGLHPITIPAGSLSLSLITDSGLQNQAITNSKADNRTSWLLLDQEGRGGGVRGDINNDLGTFLEPSSSSAKVVENEVRSLQSMNSTCNSDSSSSLLPAWLQQYKNENKGLSSSNHQDVQVGEVSKTWNNATQKQPYTICDQTLTLSSPSSSNTSSVFFYDHHPNPNNINYIWNSENRSNRNHSHSQNHNQNNDEPALRVYISNKEIVDHSPLTISPLSNPSSSNPNSTSSSGVMEAMEYVNNKFKELNLENLKNLCNALENKVPWQKEILPEIASTILQCRSGTRQRRKGNNNNNNVMMKEETWLFFQGVDLEAKEKIAMELARVVFGSSKENFISISMSSFSSSTRADSSIEDNNSCRNKRSREDPSCSYIARFGEAVCSNPHRVFLVEDIEQADYFSQLGFKRAMERGKVEDSNGEEVSLCDAIIILSCESFSSRSRACSPLTRQKSCEGSSSREDNTNHNNNNDYGDGVATLEEISPCVSLDLDLNISIDDDECNDDHDDHGSVDEIGLLESVDGKVFFKIQDL	909

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g02663	909	Coils	Coil	624	644	-	-
	Adu02g02663	909	Gene3D	-	202	388	IPR027417	-
	Adu02g02663	909	ProSiteProfiles	Clp repeat (R) domain profile.	8	175	IPR004176	-
	Adu02g02663	909	MobiDBLite	consensus disorder prediction	553	575	-	-
	Adu02g02663	909	Gene3D	-	9	173	IPR036628	-
	Adu02g02663	909	SUPERFAMILY	Double Clp-N motif	12	168	IPR036628	-
	Adu02g02663	909	Gene3D	-	611	850	IPR027417	-
	Adu02g02663	909	Coils	Coil	282	302	-	-
	Adu02g02663	909	Pfam	Clp amino terminal domain, pathogenicity island component	135	172	IPR004176	-
	Adu02g02663	909	Pfam	Clp amino terminal domain, pathogenicity island component	23	53	IPR004176	-
	Adu02g02663	909	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	908	-	-
	Adu02g02663	909	MobiDBLite	consensus disorder prediction	593	614	-	-
	Adu02g02663	909	PANTHER	PROTEIN SMAX1-LIKE 3	1	908	-	-
	Adu02g02663	909	MobiDBLite	consensus disorder prediction	727	746	-	-
	Adu02g02663	909	MobiDBLite	consensus disorder prediction	828	851	-	-
	Adu02g02663	909	MobiDBLite	consensus disorder prediction	178	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g02663	Adu-Chr2	92496771	92501334	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g02663	-		-	adu:107476159	1584.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu02g02663	02	92496771	92501334	Adu10g01124	10	22967181	22971427	ECH
	Adu02g02663	02	92496771	92501334	Adu02g02663	02	92496771	92501334	ECH
	Adu02g02663	02	92496771	92501334	Adu01g00418	01	5542609	5545171	ECH
	Adu02g02663	02	92496771	92501334	Adu07g01481	07	30325389	30330105	ECH