Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01321 ATGGGCTGCTTCAACTCTAAGCCAACAAGACAGTCTCCGGGGCAGGTCGATCCAGTAGTTCTTGCATCACAGACAGCTTTCACTGTCAGTGAGGTTGAAGCACTTTTTGAGCTATTTAAGAGCATAAGCAGTTCGGTCGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAGGAAGAAGGAGAATATCTTTGCCAATCGGATCTTTGATCTATTTGATGTTAAGAGGAAGGGAGTAATTGACTTTGATGACTTTGTTCGATCTCTCAATGTCTTCCACCCAAATGCACCACTGGAAGACAAGATTGATTTTTCATTTAGGCTCTATGATTTGGACAGCACAGGCTTTATAGAACGCCAAGAGGTCAAGCAAATGTTGATTGCGCTTCTCTGTGAATCTGAAATGAAGCTAGCAGATGAGGTGATCGAAACAATTATTGACAAGACATTCATGGATGCTGACCTGAACAAAGATGGGAAGATAGACATTGTTGAGTGGCAAAATTTCGTTTCTAAAAATCCATCATTGCTCAAAATCATGACGCTACCCTATCTGAGGGATATAACCACTTCTTTCCCAAGTTTTGTATTTAACTCTAACGTGGATGAAATCGCTGCTTGA 642 0.405 MGCFNSKPTRQSPGQVDPVVLASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADEVIETIIDKTFMDADLNKDGKIDIVEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIAA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01321 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Adu01g01321 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Adu01g01321 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Adu01g01321 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Adu01g01321 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Adu01g01321 213 CDD EFh 108 178 IPR002048 GO:0005509
Adu01g01321 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Adu01g01321 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Adu01g01321 213 SMART efh_1 108 136 IPR002048 GO:0005509
Adu01g01321 213 SMART efh_1 152 180 IPR002048 GO:0005509
Adu01g01321 213 SMART efh_1 71 99 IPR002048 GO:0005509
Adu01g01321 213 Gene3D - 17 211 - -
Adu01g01321 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Adu01g01321 213 PRINTS Recoverin family signature 75 96 - -
Adu01g01321 213 PRINTS Recoverin family signature 122 140 - -
Adu01g01321 213 PRINTS Recoverin family signature 168 188 - -
Adu01g01321 213 PANTHER BNAC07G34450D PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01321 Adu-Chr1 31771427 31776036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01321 1 213 EF-hand Containing Proteins AT4G17615 82.160 1.54e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01321 K06268 - cit:102622664 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00469 05 4889488 4893551 Adu01g01321 01 31771427 31776036 PCT