Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00012 ATGGCAGGCAAGAATGTCTACATCAGATTCCGATGCAGCACTGGGGACGCTATGGGGATGAACATGGTATCCAAAGGCGTCCAGCATGTCCTTGATTATCTCCGGGAAGGCTTCCCAGACATGGATGTTATTGGCGTTTCTGGAAATTATTGCTCAGACAAGAAAGCAGCTGCGGTAAACTGGATTGAAGGGCGTGGCAAATCTGTGGTCTGTGAAGCAATAATCAAGGAAGAGGTGGTAAAAAAGGTTTTGAAGACTAGCGTGGGGTCGCTCGTGGAGCTTAATATGCTCAAAAACCTTACTGGGTCTGCACTGGCTGGTGCTCTCGGCGGGTTCAATGCCCATGCAAGCAATATTGTTTCCGCTATCTACATAGCCACTGGTCAGGACCCCGCCCAAAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTGAATGACGGCAAGGACCTTCACATCTCTGTCACCATGCCTTCCATTGAGGTGGGTACAGTCGGAGGGGGTACCCAACTTGCATCCCAGTCAGCTTGTCTTAATTTACTTGGCGTAAAGGGAGCCAGTAAAGAGTCTCCTGGCGCAAATTCTAGGCTTCTAGCCACCGTAGTAGCCGGTTCAGTTCTTGCTGGGGAGCTTTCACTCTTGTCTGCCATTGCAGCGGGGCAACTTGTTCGAAGCCACATGAAATACAACAGATCAAGCAAGGATGTGTCCAAAGTGGTCTCTTGA 732 0.4986 MAGKNVYIRFRCSTGDAMGMNMVSKGVQHVLDYLREGFPDMDVIGVSGNYCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTSVGSLVELNMLKNLTGSALAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATVVAGSVLAGELSLLSAIAAGQLVRSHMKYNRSSKDVSKVVS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00012 243 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 49 228 - -
Accr9g00012 243 Pfam Hydroxymethylglutaryl-coenzyme A reductase 2 233 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 1 233 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 66 - -
Accr9g00012 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 47 72 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 7 25 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 98 124 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 152 173 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 CDD HMG-CoA_reductase_classI 1 233 IPR004554 GO:0004420|GO:0005515|GO:0008299
Accr9g00012 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 164 171 IPR023076 GO:0004420
Accr9g00012 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 9 23 IPR023076 GO:0004420
Accr9g00012 243 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 2 66 IPR009023 -
Accr9g00012 243 Gene3D - 1 66 IPR009023 -
Accr9g00012 243 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 237 IPR002202 GO:0004420|GO:0015936
Accr9g00012 243 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 19 222 IPR009029 GO:0015936|GO:0016616
Accr9g00012 243 Gene3D - 67 228 IPR023074 GO:0004420
Accr9g00012 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 218 231 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00012 Accr-Chr9 200441 202634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00012 1 239 Lipid Metabolism Gene Families AT1G76490 84.937 2.34e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00012 K00021 - gmx:100815480 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g02798 3 58472334 58475388 Accr9g00012 9 200441 202634 ECH
Accr9g00012 9 200441 202634 Accr9g00012 9 200441 202634 ECH