Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00962 ATGAACAGGACTGGAGGAGATTGGATGTGTGGAGCTTGCCAGCACATAAATTTCAAGAAAAGAGATGCATGCCAGCGTTGTGGGTACCCTAAATTTGGTGGTCCTGACCCTTCAACCTATGGATACAATAATAGGACTCAGGATCAGGCTTTAGCAGGGGACTGGCTTTGCCCTGCCATGAACTGTGGGGCTCACAACTACGCGAGCCGATCTAGCTGCTACCGTTGCGGCGCAACAAAGAATGATTATGTTTCTCTGTATGGCGGAAACATGGTGGTGGGTTCTGATGGATATGGATCAGATTGCAGTTTCCCTCCAGGATGGAAGGCTGGTGATTGGATTTGCAATAGATATGGCTGTGGAGTGCATAATTATGCTAGCAGGACGGAATGCTTCAAATGCAAAACGCCAAGAGATTTTGGTGGTGCAGATTGA 435 0.4782 MNRTGGDWMCGACQHINFKKRDACQRCGYPKFGGPDPSTYGYNNRTQDQALAGDWLCPAMNCGAHNYASRSSCYRCGATKNDYVSLYGGNMVVGSDGYGSDCSFPPGWKAGDWICNRYGCGVHNYASRTECFKCKTPRDFGGAD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00962 144 SUPERFAMILY Ran binding protein zinc finger-like 4 34 IPR036443 -
Accr8g00962 144 ProSitePatterns Zinc finger RanBP2-type signature. 113 134 IPR001876 -
Accr8g00962 144 ProSiteProfiles Zinc finger RanBP2 type profile. 51 82 IPR001876 -
Accr8g00962 144 ProSiteProfiles Zinc finger RanBP2 type profile. 109 140 IPR001876 -
Accr8g00962 144 ProSiteProfiles Zinc finger RanBP2 type profile. 3 33 IPR001876 -
Accr8g00962 144 SUPERFAMILY Ran binding protein zinc finger-like 47 82 IPR036443 -
Accr8g00962 144 SMART zf_4 111 137 IPR001876 -
Accr8g00962 144 SMART zf_4 53 79 IPR001876 -
Accr8g00962 144 SMART zf_4 6 30 IPR001876 -
Accr8g00962 144 Pfam Zn-finger in Ran binding protein and others 52 80 IPR001876 -
Accr8g00962 144 Pfam Zn-finger in Ran binding protein and others 109 138 IPR001876 -
Accr8g00962 144 Pfam Zn-finger in Ran binding protein and others 5 31 IPR001876 -
Accr8g00962 144 PANTHER ZINC FINGER PROTEIN 52 141 - -
Accr8g00962 144 ProSitePatterns Zinc finger RanBP2-type signature. 55 76 IPR001876 -
Accr8g00962 144 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Accr8g00962 144 Gene3D - 44 82 - -
Accr8g00962 144 Gene3D - 105 140 - -
Accr8g00962 144 Gene3D - 1 35 - -
Accr8g00962 144 SUPERFAMILY Ran binding protein zinc finger-like 106 140 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00962 Accr-Chr8 24169213 24170849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00962 6 76 EF-hand Containing Proteins AT1G55040 30.986 1.26e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00962 - - qsa:O6P43_002344 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00852 12 8571710 8572881 Accr8g00962 8 24169213 24170849 CCT