Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00234 ATGGATCCCAGCCCTGGAAACTTCCCTCTTCTCTCCTCCTTCATGTCCCGCCTCCCTTCTTTCTCTCCCACCGCCGCTTTCAATTCTGAGCTCTACGATATTGAACAGCCCCGCCTCCCTCCGCCGTCCAATCCATCTCCGTCATCGTCTTCTGGTATCAAAGATCCTGAACTAATTGCCCAGATGCCCCGCATCAGTGACCCAAAACTGTTGGCTTCCATCACCCACACCGTCAACGACATCGCTCAGACCCGATCCATGCTCCGGGTCCTCGGCGACCGACCCGACCATGAATCCGTCGACAATGCCAAGGCTAAGCTCGCTGACTTGGACGCCCATTTGTCGAAGCAGCTGGAGGAGATCGTGCTCTCGCCGAGGCCTCCTCATCTGGAAAGCCAGCAATGGCGGAATCATCAAGCGGAGAAAGAGAAGGAGTGCAGAAAATTGGCAGAGGATGAGAAGCGAGTGTACAAAGCAGTGATACAATTGGATGAGATGCACGATGCGTATGAGAAAATGCTCAAGGATGCGGAGAAAAGACTGGATGCGATTTACAACTCGCGGGATGGAGCTGCCGCCGCAGCAGATCCGGAGGAAGAGAAGTCGGAGATAGAGGAGGTGAATGAAGAGGTGGTTGGGATTATGCAAAAGGCCTATGGACAAGGGATCGAGCGAATTGATCTTTCGAATCGCAGCCTGAGATTGCTTCCCGAAGCCTTTTGGCGGATTTCTGGCTTACTGACCCTTGATGTTTCCACCAATCAGCTGACGGCGATTCCTGACGCAATAGCTGGATTGCAAAATCTTGAGGAGCTCAACTTATCTACGAATCATTTGGAGTCACTTCCGGATTCAATTGGCTTGCTTCAGAAGTTGAAAATCCTCAATGTCTCTGGAAACAAACTCACCTCATTTCCTGACTCCATCTCGCATTGCAGGTCATTGGTGGAGTTGGACGCTGGCTACAACAGTCTCACGTATTTGCCTACAAACATTGGGTATGAATTAGAGAACTTACAGAAGCTGTTGATTCATCTGAACAAACTTCGGTCGCTTCCCTCATCCATTTGTGAGATGACATCCCTGCGCTATCTAGATGCCCATTTCAATGAGCTGAATGGACTTCCAAAAGCATTTGGAAGATTGACTAACCTTGAGGTGTTGAACCTGAGCAGTAATTTCGCCGACCTTCAAGAACTTCCGGAGACATTCTGCGAGCTGATTAACCTCAAGGAGCTGGATCTTAGCAACAACCAGATCAGTGAACTTCCAGATGCATTTGGTCGCCTGGACAATTTGAAGAAGCTGAACGTAGATCAGAATCCTCTGGAAGTGCCACCAAAAGAGGTGGTGAGGCAAGGAGTTGAACAAGTGAAGAATTATATGAGGATAAGGTTGGTGAACAAATTGAACGAGGAAGAAAGAAACAGGGTGGCGATGCAAGAACAAACCCCGATGGGGTGGTTAACACGAAGCACCTCCTGGTTGAAGAACGTCTCCGAGAATGTTGCAGAATATGTCACATCTCCTAAGAGTAATCCCAAAGAGGCTTACCTTAATCAGCAGCTATAA 1572 0.4905 MDPSPGNFPLLSSFMSRLPSFSPTAAFNSELYDIEQPRLPPPSNPSPSSSSGIKDPELIAQMPRISDPKLLASITHTVNDIAQTRSMLRVLGDRPDHESVDNAKAKLADLDAHLSKQLEEIVLSPRPPHLESQQWRNHQAEKEKECRKLAEDEKRVYKAVIQLDEMHDAYEKMLKDAEKRLDAIYNSRDGAAAAADPEEEKSEIEEVNEEVVGIMQKAYGQGIERIDLSNRSLRLLPEAFWRISGLLTLDVSTNQLTAIPDAIAGLQNLEELNLSTNHLESLPDSIGLLQKLKILNVSGNKLTSFPDSISHCRSLVELDAGYNSLTYLPTNIGYELENLQKLLIHLNKLRSLPSSICEMTSLRYLDAHFNELNGLPKAFGRLTNLEVLNLSSNFADLQELPETFCELINLKELDLSNNQISELPDAFGRLDNLKKLNVDQNPLEVPPKEVVRQGVEQVKNYMRIRLVNKLNEEERNRVAMQEQTPMGWLTRSTSWLKNVSENVAEYVTSPKSNPKEAYLNQQL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00234 523 ProSiteProfiles Leucine-rich repeat profile. 409 430 IPR001611 GO:0005515
Accr8g00234 523 MobiDBLite consensus disorder prediction 32 55 - -
Accr8g00234 523 Coils Coil 463 483 - -
Accr8g00234 523 Pfam Leucine rich repeat 338 393 IPR001611 GO:0005515
Accr8g00234 523 Pfam Leucine rich repeat 401 443 IPR001611 GO:0005515
Accr8g00234 523 Pfam Leucine rich repeat 268 325 IPR001611 GO:0005515
Accr8g00234 523 SMART LRR_bac_2 382 403 - -
Accr8g00234 523 SMART LRR_bac_2 407 426 - -
Accr8g00234 523 SMART LRR_bac_2 289 308 - -
Accr8g00234 523 SMART LRR_bac_2 430 449 - -
Accr8g00234 523 SMART LRR_bac_2 243 262 - -
Accr8g00234 523 SMART LRR_bac_2 361 378 - -
Accr8g00234 523 SMART LRR_bac_2 266 285 - -
Accr8g00234 523 SMART LRR_bac_2 336 355 - -
Accr8g00234 523 SMART LRR_bac_2 312 331 - -
Accr8g00234 523 PRINTS Leucine-rich repeat signature 266 279 - -
Accr8g00234 523 PRINTS Leucine-rich repeat signature 246 259 - -
Accr8g00234 523 Coils Coil 100 120 - -
Accr8g00234 523 ProSiteProfiles Leucine-rich repeat profile. 268 289 IPR001611 GO:0005515
Accr8g00234 523 Gene3D Ribonuclease Inhibitor 336 464 IPR032675 -
Accr8g00234 523 Gene3D Ribonuclease Inhibitor 112 335 IPR032675 -
Accr8g00234 523 FunFam Plant intracellular Ras-group-related LRR protein 9 142 327 - -
Accr8g00234 523 SUPERFAMILY L domain-like 221 447 - -
Accr8g00234 523 PANTHER - 222 393 - -
Accr8g00234 523 ProSiteProfiles Leucine-rich repeat profile. 291 312 IPR001611 GO:0005515
Accr8g00234 523 SMART LRR_typ_2 359 381 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 382 406 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 336 357 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 243 265 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 313 335 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 430 453 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 266 288 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 289 312 IPR003591 -
Accr8g00234 523 SMART LRR_typ_2 407 429 IPR003591 -
Accr8g00234 523 FunFam Plant intracellular Ras-group-related LRR protein 2 331 503 - -
Accr8g00234 523 Coils Coil 160 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00234 Accr-Chr8 3101176 3103626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00234 308 481 Receptor kinase-like Gene Family AT5G46330 29.412 1.39e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00234 - - gmx:100803823 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00234 8 3101176 3103626 Accr12g00507 12 4673524 4676127 CCT
Accr8g00234 8 3101176 3103626 Accr8g00234 8 3101176 3103626 ECH