Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00124 ATGGAGCTCCAGCGATCGTCTTCTTCATCCAACCATGTTCAATCTAGCAGACTAGCTTCCCTGTCTTCACAACGCAGCCTTGTTTCAGTTCCTTCCCTGAACTCTCAGTTTCAGCACCATGCCTCATCAACCTATTACCAGTGTCTAACAACTCTCAAAGGTCACACTTCTTACATATCATGTATAGCCCTCGCCGGAAAATTCCTCTACACTGGATCATCTGACAGAGAAATCAGATCCTGGAACCATAATGCTCCTTTCCATTCTGATTTATTCGACCAGTCAAATTCTTCAATCACTACTAGCATAATGGTGTCGGCAGGGAAAGGTGCAGTGAAGTCACTAATAGTTCAGTCTGATAAACTATTCAGTGCTCACCAAGACTACAAAATTAGGGTGTGGAATGTTACAGCCGACGAGTCTGATCACCGGAAGTACAGCCGTTTAGCCACACTTCCGACGTTAGGAGACCGAGCCACGAAGGTGTTGAACCCAAAGAACCATGTTCAGATTAGGAGGCATAAAAAATGTACATGGGTTCACCATGTGGACACAGTCTCTGCTTTGGCCCTGTCCAGGGACGAGACCTTGCTCTACTCTGTTTCATGGGATCGTACAGTTAAAGTGTGGAGAATCAAAGACTTGACCTGTTTAGAATCAGTGAACAACGCCCATGATGATGCTATAAACGCCATAGCAGTTTCTGGTGATGGTTATGTGTACACTGGATCAGCAGATAAGAAGATCAAAGTGTGGAAGAAATGTGAAGGAGAGAAGAAACATAGTTTGGTTGATGCGTTAGAGAAACACAACTCTGGGATTAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGTGACAGATCTATACTGGTTTGGGAAAAGGATAATGGTGAAGAAGATGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGACACACAAAGTCTATATTATGTTTAGCTATGGTATCTGATTTGGTCTTTAGTGGTTCTGCTGATAAAACGATAAGAATATGGAGAGGCGTTCATGGTGATTATTCCTGTTTAGCAGTTTTAGAAGGGCATAATGGTCCTGTTAAGTGCTTAACTGCAGCAGTTGATCGATGTAATGGCGCTTCGGAAGAATCTTTTCTAGTTTACAGTGGCGGTTTGGACTGTGACATTAAGGTTTGGCAGATCATTGTACCTCTTGTTCTCTAG 1215 0.437 MELQRSSSSSNHVQSSRLASLSSQRSLVSVPSLNSQFQHHASSTYYQCLTTLKGHTSYISCIALAGKFLYTGSSDREIRSWNHNAPFHSDLFDQSNSSITTSIMVSAGKGAVKSLIVQSDKLFSAHQDYKIRVWNVTADESDHRKYSRLATLPTLGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRIKDLTCLESVNNAHDDAINAIAVSGDGYVYTGSADKKIKVWKKCEGEKKHSLVDALEKHNSGINALALSSDGSLLYSGACDRSILVWEKDNGEEDGKMRLVGALRGHTKSILCLAMVSDLVFSGSADKTIRIWRGVHGDYSCLAVLEGHNGPVKCLTAAVDRCNGASEESFLVYSGGLDCDIKVWQIIVPLVL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00124 404 SMART WD40_4 308 345 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 260 299 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 172 211 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 96 135 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 45 82 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 350 397 IPR001680 GO:0005515
Accr8g00124 404 SMART WD40_4 214 253 IPR001680 GO:0005515
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Accr8g00124 404 Gene3D - 151 257 IPR015943 GO:0005515
Accr8g00124 404 Gene3D - 12 150 IPR015943 GO:0005515
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 213 - -
Accr8g00124 404 CDD WD40 48 397 - -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 82 IPR001680 GO:0005515
Accr8g00124 404 FunFam BnaA09g28200D protein 169 257 - -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Accr8g00124 404 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Accr8g00124 404 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Accr8g00124 404 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Accr8g00124 404 Gene3D - 258 401 IPR015943 GO:0005515
Accr8g00124 404 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 398 IPR045182 -
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 82 - -
Accr8g00124 404 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515
Accr8g00124 404 Pfam WD domain, G-beta repeat 267 298 IPR001680 GO:0005515
Accr8g00124 404 Pfam WD domain, G-beta repeat 180 210 IPR001680 GO:0005515
Accr8g00124 404 Pfam WD domain, G-beta repeat 311 344 IPR001680 GO:0005515
Accr8g00124 404 Pfam WD domain, G-beta repeat 352 396 IPR001680 GO:0005515
Accr8g00124 404 Pfam WD domain, G-beta repeat 223 253 IPR001680 GO:0005515
Accr8g00124 404 SUPERFAMILY WD40 repeat-like 46 397 IPR036322 GO:0005515
Accr8g00124 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00124 Accr-Chr8 1709124 1710338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00124 224 397 Acyl Lipid Metabolism Gene Families AT3G18860 27.072 2.52e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00124 - - qsa:O6P43_022753 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00124 8 1709124 1710338 Accr12g00591 12 5576823 5578061 CCT
Accr8g00124 8 1709124 1710338 Accr12g00591 12 5576823 5578061 ECH
Accr8g00124 8 1709124 1710338 Accr8g00124 8 1709124 1710338 ECH