Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00591 ATGGAACATCACCGATCTTATGGTGTCTCTTCTTCTTCCTCACACCATCTTCAAACAGGGTCACGGTCTGTTTCTTCACAACGTAGCATAGGTTCAGTCCCTTCACTGAACTCACAATCTCAACACCATCATGAAATCCAACCTTCCACCACCACCTACCACCGGTGCCTCACAACTCTCAAAGGCCACACCTCTTCTTCTTCTTCTTACACATCCTGTCTTGCTCTGTCAGGGAAACTCCTCTACACAGGTTCATCCGACAGAGAAATCAGATCATTGAATCGCTCTGTTTCGTTCTCTGATGACTCATCAGACCCTGAAATTTGCATCACCAACATAGCACTTTCAGGAAAAGGTGCAGTGAAATCCATAGTGGTTCAATCTGATAGGCTCTTCAGCGCACACCAAGATCACAAAATCAGAGTATGGAAGATCATCAGCAACAACAAAACAGACCAACAAGAGTACACACATGTGGCCACACTTCCAACGTTGGGTGATCGAGCTTCCAAGATTCTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCACGTGGACACAGTCTCTGCTCTAGCTCTGTCCAAAGACGAGACCTTGCTCTACTCTGTTTCATGGGACAGGACAGTGAAAATATGGAGAACCAGAGATTTCAGCTGTTTAGAATCAGTAACCAACGCACACGATGACGCCATAAATGCGGTCGCAGTTTCCAACGATGGGTACGTATACACAGGATCAGCAGACAGGAAAATCAAAGTGTGGAAGAAAGGAGAAGGAGAAAAGAAGCACACTTTGGTAGACACATTAGAGAAACACGATTCTGGTGTCAATGCTTTGGCTCTGAGCAATGATGGGTGTGTGTTATATTCTGGTGCGAGTGACAAATCAATACTGGTTTGGGAGAGAGATGATGAAGAAGAAGATGGGAAAATGGGGTTGGTGGGGGCATTAAGAGGGCATAGTATGTCTATATTGTGTTTGGCTGTGGTTTGGGATTTGGTGTGTAGTGGTTCTGCGGATAGAACCATTCGGATATGGAGAGGGAATGAGAGAGAGTACTCGTGTTTAGCAGTTTTGGAAGGGCATAGAGGAGCGATTAAGTGTATAACTGCCGCCACTGATCGTTGTGATTCGTCGGAAGCTTCTTTTCTAGTGTACAGTGGCAGTTTGGACTGCGACATTAAGATGTGGCAGGTTGTTGTTCCTGTTTCTTAG 1239 0.4568 MEHHRSYGVSSSSSHHLQTGSRSVSSQRSIGSVPSLNSQSQHHHEIQPSTTTYHRCLTTLKGHTSSSSSYTSCLALSGKLLYTGSSDREIRSLNRSVSFSDDSSDPEICITNIALSGKGAVKSIVVQSDRLFSAHQDHKIRVWKIISNNKTDQQEYTHVATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTVKIWRTRDFSCLESVTNAHDDAINAVAVSNDGYVYTGSADRKIKVWKKGEGEKKHTLVDTLEKHDSGVNALALSNDGCVLYSGASDKSILVWERDDEEEDGKMGLVGALRGHSMSILCLAVVWDLVCSGSADRTIRIWRGNEREYSCLAVLEGHRGAIKCITAATDRCDSSEASFLVYSGSLDCDIKMWQVVVPVS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 354 - -
Accr12g00591 412 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 408 IPR045182 -
Accr12g00591 412 Gene3D - 180 409 IPR015943 GO:0005515
Accr12g00591 412 FunFam BnaA09g28200D protein 179 267 - -
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 354 IPR001680 GO:0005515
Accr12g00591 412 SUPERFAMILY WD40 repeat-like 54 407 IPR036322 GO:0005515
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Accr12g00591 412 Gene3D - 40 179 IPR015943 GO:0005515
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 220 - -
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 263 - -
Accr12g00591 412 Pfam WD domain, G-beta repeat 322 354 IPR001680 GO:0005515
Accr12g00591 412 Pfam WD domain, G-beta repeat 274 308 IPR001680 GO:0005515
Accr12g00591 412 Pfam WD domain, G-beta repeat 190 220 IPR001680 GO:0005515
Accr12g00591 412 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Accr12g00591 412 Pfam WD domain, G-beta repeat 362 405 IPR001680 GO:0005515
Accr12g00591 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 272 IPR001680 GO:0005515
Accr12g00591 412 MobiDBLite consensus disorder prediction 1 50 - -
Accr12g00591 412 CDD WD40 56 406 - -
Accr12g00591 412 SMART WD40_4 53 94 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 360 406 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 270 309 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 224 263 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 318 355 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 106 144 IPR001680 GO:0005515
Accr12g00591 412 SMART WD40_4 182 221 IPR001680 GO:0005515
Accr12g00591 412 MobiDBLite consensus disorder prediction 7 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00591 Accr-Chr12 5576823 5578061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00591 234 406 Acyl Lipid Metabolism Gene Families AT3G18860 29.050 1.05e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00591 - - gmx:100815608 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00124 8 1709124 1710338 Accr12g00591 12 5576823 5578061 CCT
Accr8g00124 8 1709124 1710338 Accr12g00591 12 5576823 5578061 ECH
Accr12g00591 12 5576823 5578061 Accr12g00591 12 5576823 5578061 ECH