Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00500 ATGAACGGTGGCGATGAGGTAGTCGCAACTCCGGCGGGTCCAACGCTGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGCGAACGTGCGGCCGGCGAAGAAGTTCAGGAAGTTGACATAATTTCTGCCATCGAATTTGACAAGTCTGGTGACCATCTAGCAACTGGTGATCGTGGTGGTCGGGTTGTTCTTTTTGAGAGGACAGATACAAAAGATCATGGTGGATCAAGACAGGATTTGGAGACGATGGACTATCCACTAAGCAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCTGAGTTTGATTATCTTAAGAGCTTGGAAATAGAGGAGAAAATCAACAAAATTAGATGGTGCCAATCCGCTAATGGTGCCCTATTTCTTCTATCCACAAATGATAAAACCATAAAGTTTTGGAAGGTCCAGGAAAAGAAGATCAAGAAAATTTCTGAAATGAATGTTGACCCTTCAAAAGCTATGGGGAATGGCTGTGTTGCTAGTTCCAGCAATTCTAATAATCCTAGGACATATATTGCTAATGGAGGATCTCTGGATAATTCATGCAATCATCTAAGTGATGACTTCACATTTCCATCTGGGGGCATTTCCTCATTACGATTACCTGTGGTAGAGAGCTGCAACATTATTGTGGTTGCAGATCGGAGGAAATCATGGGTATCGAGCCATGAGACCAGCCTGGTGGCTCGTTGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCTGATGATTTGAGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTTAACATAGTTGATGTTAAGCCTGCAAACATGGAAGATCTGACTGAGGTTATAACATCAGCAGAGTTCCATCCTATGCATTGCAATATGTTGGCATACAGCAGTTCAAAAGGTTCAATACGACTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCAAGATCATTTTTTACGGAGATTATTGCTTCTATCTCAGACATAAAATTTTCCAAGGACGGAAGATACATTCTTAGCCGTGATTACATGACCCTAAAGTTATGGGACATTAATATGGATTCTGGTCCAGTTGCGGCTTTCCAGGTTCATGAGTATTTAAGACCTAAGTTATGTGATTTATATGAAAATGACTCAATTTTTGATAAGTTTGAGTGTTGCCTGAGTGGCGATGGATTGCGTGTTGCAACTGGTTCTTACAGTAACCTTTTCCGTGTGTTTGGTTGCGGCCCGGGAAGTACTGAAGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCTACCCCTTCAAGGCCTTCGAGATCACTCGGGAGCAGTTTAACACGGGTTGTAAGACGAGGAGCAGAAAGTTCTGGTGTTGATGCAAATGGGAATTCTTTTGATTTTACAACGAAGTTACTGCACCTAGCATGGCACCCAACCGAAAATTCTATTGCGTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1596 0.4223 MNGGDEVVATPAGPTLPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRQDLETMDYPLSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANGALFLLSTNDKTIKFWKVQEKKIKKISEMNVDPSKAMGNGCVASSSNSNNPRTYIANGGSLDNSCNHLSDDFTFPSGGISSLRLPVVESCNIIVVADRRKSWVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPMHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVAAFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCGPGSTEATTLEASKNPMRRQVPTPSRPSRSLGSSLTRVVRRGAESSGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00500 531 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 248 262 IPR018067 -
Accr6g00500 531 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 17 531 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 Pfam WD domain, G-beta repeat 361 386 IPR001680 GO:0005515
Accr6g00500 531 Pfam WD domain, G-beta repeat 242 278 IPR001680 GO:0005515
Accr6g00500 531 SMART WD40_4 239 278 IPR001680 GO:0005515
Accr6g00500 531 SMART WD40_4 348 386 IPR001680 GO:0005515
Accr6g00500 531 SMART WD40_4 289 329 IPR001680 GO:0005515
Accr6g00500 531 SMART WD40_4 105 145 IPR001680 GO:0005515
Accr6g00500 531 SMART WD40_4 31 66 IPR001680 GO:0005515
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 417 443 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 500 529 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 390 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 391 416 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 SUPERFAMILY WD40 repeat-like 39 523 IPR036322 GO:0005515
Accr6g00500 531 Gene3D - 248 529 IPR015943 GO:0005515
Accr6g00500 531 PIRSF PPA2_B55 12 531 IPR000009 GO:0000159|GO:0019888
Accr6g00500 531 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Accr6g00500 531 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 225 527 - -
Accr6g00500 531 MobiDBLite consensus disorder prediction 458 479 - -
Accr6g00500 531 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Accr6g00500 531 Gene3D - 35 199 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00500 Accr-Chr6 10006478 10013662 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00500 K04354 - qsa:O6P43_018282 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr7g00629 7 9352226 9358932 Accr6g00500 6 10006478 10013662 CCT
Accr6g00500 6 10006478 10013662 Accr7g00629 7 9352226 9358932 ECH
Accr6g00500 6 10006478 10013662 Accr6g00500 6 10006478 10013662 ECH