Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02574 ATGGCTGATCAAAGGGTGTTCTGGCGTGGCATTTGTTCGTACATTCTGCTTTTCATGTGTTTGATACAGATACAGAGTCATCTATATGTGCGTGCCATTTTGGACCCTGTTGATTTCTTGGCTCTGCAATCCATTCACAAGTCTCTGCAAGACATGCCGGGATCCCGTTTCCTTTCTTCTTGGGATTTCACTTCTGACCCATGTAATTTCGCCGGCGTTTACTGTGATTCCGATAAGGTTATTTCTCTCAATCTCGGGGACCCCAGAGCCGGTGCCCCGGGCCTAACCGGAAAGCTAGACCCAGCCATCGGCAGGCTATCTGCTCTCGCCGAGTTCACGGTAGTCCCGGGCAGGATATACGGCCCTCTGCCGCTGACATTATCCAACTTGAAGAGCCTCCGATTCCTTGGCATCAGCCGGAACTTCATTTCCGGCGAGATTCCGTGGACCCTGGGACAGTTGCACAATCTCAAAACCCTCGACCTCAGCTACAATCAGTTGACCGGAAGCATTCCTCCGTCCGTTGGAGCATTAACCGGATTAAACAATGTGATCCTCTGCCACAACCGTCTTTCCGGTTCGGTGCCTAAGTTTGCATCGCAGACGCTAACCCGGCTCGACCTGAAGCACAATGCGCTCTCCGGTACGCTGGCTTCCGATTCTCTCCCGGCCTCCCTCCAATATCTGTCTCTATCATGGAACCAGTTGAGTGGGCCAGTGAATCAGCTGTTGAACCGGATGGACCAACTGAACTATCTGGATCTTAGCATGAACAAGTTCTCGGGCATCATTCCGGGTCGGATATTCTCATTTCCGCTCACCAATTTACAATTAGAAAGGAATGAATTTTGGGGGGCAGTGCAACCGGTTGATCAGGTGAAAATCCCAACCGTTGATCTGAGCTACAACAGGCTGTCGGGCCAAGTGTCGCCAATGTTCTCGACCATACAGAATCTATACCTAAACAACAACCGGTTCACGGGTCAGGTTCCAAGCAGCTTCGCGGATCGGCTGTTGGATGCGACCATACAGATACTCTACTTACAGCACAATTTTCTGACGGGGATAGCGATCAGCCCGACGGCTGAGATTCCTCTAAGCAGCTCCTTGTGTCTACAGTATAATTGCATGGTCCCACCCATAGATACCACTTGCCCTCTGAAGGCAGGGAAACAGATATCCAGGCCTTCTTCCCAGTGCAGCGCCAGCCAATGGAGGAGGGGCTAG 1227 0.5159 MADQRVFWRGICSYILLFMCLIQIQSHLYVRAILDPVDFLALQSIHKSLQDMPGSRFLSSWDFTSDPCNFAGVYCDSDKVISLNLGDPRAGAPGLTGKLDPAIGRLSALAEFTVVPGRIYGPLPLTLSNLKSLRFLGISRNFISGEIPWTLGQLHNLKTLDLSYNQLTGSIPPSVGALTGLNNVILCHNRLSGSVPKFASQTLTRLDLKHNALSGTLASDSLPASLQYLSLSWNQLSGPVNQLLNRMDQLNYLDLSMNKFSGIIPGRIFSFPLTNLQLERNEFWGAVQPVDQVKIPTVDLSYNRLSGQVSPMFSTIQNLYLNNNRFTGQVPSSFADRLLDATIQILYLQHNFLTGIAISPTAEIPLSSSLCLQYNCMVPPIDTTCPLKAGKQISRPSSQCSASQWRRG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02574 408 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 402 - -
Accr5g02574 408 Pfam Leucine Rich repeat 200 215 IPR001611 GO:0005515
Accr5g02574 408 SUPERFAMILY L domain-like 273 378 - -
Accr5g02574 408 Pfam Leucine Rich Repeat 156 177 IPR001611 GO:0005515
Accr5g02574 408 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Accr5g02574 408 SUPERFAMILY L domain-like 38 285 - -
Accr5g02574 408 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Accr5g02574 408 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Accr5g02574 408 PRINTS Leucine-rich repeat signature 157 170 - -
Accr5g02574 408 PRINTS Leucine-rich repeat signature 247 260 - -
Accr5g02574 408 FunFam Nuclear pore complex protein NUP107 36 197 - -
Accr5g02574 408 Gene3D Ribonuclease Inhibitor 201 385 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02574 Accr-Chr5 52074798 52076024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02574 41 355 Receptor kinase-like Gene Family AT5G62230 31.325 3.54e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02574 - - qsa:O6P43_010682 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01838 2 52431045 52432262 Accr5g02574 5 52074798 52076024 CCT
Accr5g02574 5 52074798 52076024 Accr5g02574 5 52074798 52076024 ECH