Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02378 ATGGTGGGTATCGTTTCATTGATAACAGGAAAGGCAGGGCCGAGTGGGTTTGGTTCTGCTTCAACTGCAGAGGAGGTCACAGAGGGAATTGATGCCTCCAATCTTACCGCCATTATCACAGGAGGAGCAAGTGGAATTGGCTTAGAGACAGCAAGAGTGTTGGCTCTTCGGAAGGTCCATGTGGTCATTGCTGCGAGGAATATGGAAGCTTGCAAGAAAGCAAATAAACTTATTCTTGAGCAAAACCAGTCTGCTCGTATCGATATACTGGAGCTCGACCTTGCCTCCGTCAAGTCTATTAGAGCCTTTGTTGACAACTTCCTCGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCGTTCCAACTCTCCCAGGATGGGATTGAGATGCAGTTCGCAACAAATCATATAGGTCATTTCCTCTTGACCAATCTTCTCCTTGACAAGATGAAGGAAACTGCAAAAGTCAGTGGAATTGAGGGAAGGATCGTGAACCTGTCATCAGTTGCCCATAGTTATCCTTACTTAAAGGGGATTCGATTTGAGAAGATCAATAACCGAAATGGTTACTGTGACAAGAAGGCTTATGGGCAGTCCAAGTTGGCTAACATTCTTCACTCAAATGAGCTAGCTCGCCGCCTGCAGGAAGAAGGAGTGAACATTACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCTACATTCCTTATGCATCTTCTGAAAGTGTTCACCTTTTACATATGGAAGAATGTCCCGCAGGGAGCAGCCACAACATGCTATGTTGCTCTGCATCCAAAGGTGAAAGGCGTGAGTGGGAAATACTTTCAGGATTGCAACGAGCATAAGCCAAGTTCATATGCCAGAAACAAAGTGCTGGCCAGGAAACTCTGGGATTTCAGCAACACCGTCGTCAATTCACTTTCCAAGGCTTAG 972 0.4558 MVGIVSLITGKAGPSGFGSASTAEEVTEGIDASNLTAIITGGASGIGLETARVLALRKVHVVIAARNMEACKKANKLILEQNQSARIDILELDLASVKSIRAFVDNFLALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHIGHFLLTNLLLDKMKETAKVSGIEGRIVNLSSVAHSYPYLKGIRFEKINNRNGYCDKKAYGQSKLANILHSNELARRLQEEGVNITANSVHPGVIMTPLMRHSTFLMHLLKVFTFYIWKNVPQGAATTCYVALHPKVKGVSGKYFQDCNEHKPSSYARNKVLARKLWDFSNTVVNSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02378 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Accr5g02378 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Accr5g02378 323 PANTHER RETINOL DEHYDROGENASE 14 316 - -
Accr5g02378 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Accr5g02378 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Accr5g02378 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Accr5g02378 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Accr5g02378 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Accr5g02378 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Accr5g02378 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Accr5g02378 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Accr5g02378 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Accr5g02378 323 Gene3D - 26 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02378 Accr-Chr5 49903376 49904987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02378 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 24.830 6.04e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02378 K11153 - gmx:100801849 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02104 2 56062827 56066302 Accr5g02378 5 49903376 49904987 CCT
Accr5g02378 5 49903376 49904987 Accr5g02378 5 49903376 49904987 ECH