Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02253 ATGGCTCCGTTTCTCCTTGCTATATTAATGGTGATAGTTCCTTCAGGCCATGCCTCGTGGCCACCTTCACCAGGCTACTGGCCAAGCTCTAGATTCAGGTCTATGAGCTTCTACAGAGGATTTACAAACCTCTGGGGTCCTCAGCATCAAAGTCTAGACCAAAATACATTATCAATTTGGCTCGATAGAACCTCAGGGAGTGGGTTCAAGTCGGTTCGTCCCTTTCGGTCCGGCTACTTTGGTGCTTCTATTAAGCTCCAACCGGGCTATACTGCAGGAGTTATCACAGCATTCTACCTTTCGAACAACGAAGCACATCCAGGCTTCCACGATGAAGTGGACATAGAATTTCTGGGGACAACATTTGGAAAACCTTATACTCTGCAGACAAATGTGTACATAAGAGGGAGTGGTGACGGCAAAATCATAGGCAGGGAAATGAAGTTCCATCTCTGGTTTGATCCCACCAAAGATTTTCATCACTACGCTATACTCTGGAGCCCTAAGGAAATAATATTCCTAGTGGATGATGTGCCGATAAGGAGGTACCCGAAAAAGAGTGATGCAACATATCCAGTGAGGCCAATGTGGGTATATGGTTCGATATGGGATGCGTCGTCATGGGCAACTGAAGATGGAAAGTACAAAGCCGATTACAGATACCAACCATTTGTGGCCAAGTACAACAACTTCAAAGCCAGTGGTTGCTCAGCATATGCGCCGATTTGGTGCCGGCCGGTCTCTGTTTCCCCCTACGGGTCCGGTGGGTTGAGCCGACAGCAATACAGAGCAATGGGATGGGTTCAAAGATACCATATGGTTTATAACTATTGCAATGACCCAAAAAGAGACCGCAGGCTAACGCCGGAGTGTTGGGGTTGA 882 0.4739 MAPFLLAILMVIVPSGHASWPPSPGYWPSSRFRSMSFYRGFTNLWGPQHQSLDQNTLSIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPKKSDATYPVRPMWVYGSIWDASSWATEDGKYKADYRYQPFVAKYNNFKASGCSAYAPIWCRPVSVSPYGSGGLSRQQYRAMGWVQRYHMVYNYCNDPKRDRRLTPECWG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02253 293 Gene3D - 17 291 - -
Accr5g02253 293 Pfam Glycosyl hydrolases family 16 40 220 IPR000757 GO:0004553|GO:0005975
Accr5g02253 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Accr5g02253 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 278 IPR013320 -
Accr5g02253 293 PIRSF EndGlu_transf 4 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Accr5g02253 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Accr5g02253 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 291 IPR044791 GO:0004553
Accr5g02253 293 FunFam Xyloglucan endotransglucosylase/hydrolase 24 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02253 Accr-Chr5 48849953 48851125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02253 1 291 Glycoside Hydrolase AT3G44990 65.636 3.74e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02253 K08235 - gmx:100796698 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02237 2 57234612 57236143 Accr5g02253 5 48849953 48851125 CCT
Accr5g02253 5 48849953 48851125 Accr5g02253 5 48849953 48851125 ECH