Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01952 ATGCACAAACGGAAAGAGAGTCGAGAGATGGCCAGCTACCACAAACGTATCTTACAGTTTTTCGTCATTATAGTTTCTTTAGTTGCTTGTTATTGTTCTTTGCAAGAGGACCCACATATTCTTCTTCATTCTGATGATTCACCTAATACGATTGATGATGGCGGGACATTCGATAACTTGATCAAGCAAAGCTCAGACTCTGATGATCATTTGAGATTGAAGATATTGGATAAGTTGGTTGGCCCTTCTCTTTCGCTTATCACGGTTATTGTCAATGATTACGGAGCTGAAGGGGATGGGATTACTGGCGACACAAAGGCATTCAAGAAGGCTTGGAGAGTTGCATGCTCTTCTTCTGGGGAAGCAGTTTCTCTTGTGGTGCCTAAGCAGAATTACCTACTCAAGCCCATAGGATTCTCAGGGCCATGCAAATCTGACCATATCACAGTGCAGATTCATGGAGTGCTTGAAGCGTCTGATAATCCTTCAGACTACGAACATGATCCCACACACTGGCTTGAGTTTAAGAACGTGCAGAGTCTATCAGTTAAAGGTGATGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAGAAACTTCCCTGCAAGAATGCCCCTACGGCTCTGACCTTCCGCAACTGCAAGAACTTGGTGGTTGAGAACTTGAAGATAAAAGATGCACAACAAATTCACTTATCATTTCAGGACTCCATCTACGTTAGAGCTTCGGGTCTCACTGTGACTGCACCTCAGGATAGTCCTAACACTGACGGAATTCATGTCACTAATACACAAAACATCCAAATCTCAAGTTCTGTTATAGCAACTGGAGATGACTGTATATCAATTGTAAGTGGATCCCAGAATGTACAAGCTACAGATATAACATGTGGACCAGGCCATGGCATCAGCATTGGAAGCTTAGGGACCAAACGAGCCGAAGCTTTTGTTTCTGACGTAACAGTAAACAGAGCCAAGCTATCTGGAACTAAAAATGGAGTAAGAATTAAGACATGGCAGGGTGGGTCGGGAAGTGCAAGCAACATCAGGTTCCAGAACATAGAAATGAACAATGTGACCAACTCCTTAGTAATAGACCAGAGCTACTGTGACCAGAAGGATCCATGCAAACAAAAGCAGGACTCCGCGGTTCAGATCAAGAATGTTTTATACCAGAACATAAAAGGCACGAGTGCTTCAAAAGTAAGCGTGAAGTTTGATTGCAGCGAGGACTTTCCATGCCAAGGGATTGTGATGCAGAACGTAGACTTGACACTTGAAACAGGGGAAGCTTCCAAAGCTTCATGTCACAATGTTCAAGTGTCCTACGTTGGACTCGCTGCCCATAGCTAG 1374 0.436 MHKRKESREMASYHKRILQFFVIIVSLVACYCSLQEDPHILLHSDDSPNTIDDGGTFDNLIKQSSDSDDHLRLKILDKLVGPSLSLITVIVNDYGAEGDGITGDTKAFKKAWRVACSSSGEAVSLVVPKQNYLLKPIGFSGPCKSDHITVQIHGVLEASDNPSDYEHDPTHWLEFKNVQSLSVKGDGTINGNGNIWWQNSCKRNKKLPCKNAPTALTFRNCKNLVVENLKIKDAQQIHLSFQDSIYVRASGLTVTAPQDSPNTDGIHVTNTQNIQISSSVIATGDDCISIVSGSQNVQATDITCGPGHGISIGSLGTKRAEAFVSDVTVNRAKLSGTKNGVRIKTWQGGSGSASNIRFQNIEMNNVTNSLVIDQSYCDQKDPCKQKQDSAVQIKNVLYQNIKGTSASKVSVKFDCSEDFPCQGIVMQNVDLTLETGEASKASCHNVQVSYVGLAAHS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01952 457 ProSitePatterns Polygalacturonase active site. 301 314 IPR000743 GO:0004650|GO:0005975
Accr5g01952 457 Gene3D - 85 457 IPR012334 -
Accr5g01952 457 SUPERFAMILY Pectin lyase-like 87 453 IPR011050 -
Accr5g01952 457 FunFam Polygalacturonase QRT2 80 456 - -
Accr5g01952 457 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Accr5g01952 457 SMART pbh1 324 345 IPR006626 -
Accr5g01952 457 SMART pbh1 271 292 IPR006626 -
Accr5g01952 457 SMART pbh1 353 374 IPR006626 -
Accr5g01952 457 SMART pbh1 221 270 IPR006626 -
Accr5g01952 457 Pfam Glycosyl hydrolases family 28 119 448 IPR000743 GO:0004650|GO:0005975
Accr5g01952 457 PANTHER - 87 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01952 Accr-Chr5 45831462 45833843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01952 81 452 Glycoside Hydrolase AT3G07970 57.487 1.33e-146 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01952 K01184 - gmx:100797601 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g01952 5 45831462 45833843 Accr2g02598 2 61574957 61577342 CCT
Accr5g01952 5 45831462 45833843 Accr5g01952 5 45831462 45833843 ECH