Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01018 ATGGGTTTGTCTAGATCATCGGGGGCCATGATACTGCTGGTGTTCATGGTCTTCACCGTGTCTTCGGCCTTGGACATGTCCATAATCTCCTACGACCGAACCCACCCCGATCAATCTAACTGGAGGACGGATTCCGAGGTTATGGCAATATACGAACACTGGCTTGTAAAACATGGCAAGGCCTACAATGCTCTGGGCGAGAAGGAGAAGAGGTTCGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAGCACAACGCTGGGAATCGGACCTACAAAGTCGGGTTGAACCGATTCGCTGATCTCACCAATGAGGAGTACAGGGCCAAGTACCTGGGAACCAAGATCGATCACAAGAGGAGGATTGCCAAGACCAGGAACAACCGTTACGCCTCACAGATCGGCGACAAATTGCCGGAATATGTTGATTGGCGGAAGGAAGGTGCGGTTGTCCAAGTCAAAGATCAAGGAAGTTGCGGGAGTTGCTGGGCATTCTCAACCGTAGCTGCAGTGGAAGGAATAAACAAGTTAGTGACAGGCGATCTAATTTCACTATCTGAGCAAGAACTGGTGGATTGTGATACAAAATATAATGAAGGGTGCAATGGGGGATTAATGGACTATGCCTTTCAGTTCATCATCAACAATGGTGGCATTGACACTGAAGAGGATTATCCTTACCATGCTGTTGATGGCCAGTGTGACCATTATAGGAAAAATGCAAAAGTTGTGACAATTGATGGCTATGAGGATGTTCCTGCCAATGATGAGAAAGCATTGAAAAAAGCTGTCGCAAATCAACCAGTGAGCGTTGCAATTGAAGCAGGCGGCAGGGAATTTCAATTATATGTATCTGGTGTATTTACCGGAAGATGTGGTACAGCACTAGATCATGGTGTTGCAGCTGTTGGTTATGGCACAGAAAATGGCGTGGATTACTGGATTGTGAAGAACTCCTGGGGATCGAGCTGGGGAGAGGAAGGGTACATTAGAATGGAGCGTAATGTGGGAAAAACCAATACAGGCAAGTGTGGCATTGCGATGCAGGCCTCCTATCCTACAAAGAAAGGCCTTAATCCCCCAAAGCCCAAACCATCTCCTCCTTCACCGGTGAAGCCACCCACCGTTTGTGATGATTACTACAGCTGTCCGGAGAGCACTACATGCTGCTGCGTCTATGAGTATGGAAAGTATTGCTTTGCCTGGGGATGCTGTGCTCTTGAGGCTGCCACCTGCTGTGATGACCACTACAGTTGCTGCCCTCATGACTATCCCATCTGTAACCTTGACGCTGGCACCTGTCTTATGAGTGAGACCACCCCATTTGGAGTGAAGGCAATGATGCGTTTTCCAGCTAAACCCCATTTTTCATTTGGAGTGGCGCCAATGGAATGA 1395 0.4796 MGLSRSSGAMILLVFMVFTVSSALDMSIISYDRTHPDQSNWRTDSEVMAIYEHWLVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNAGNRTYKVGLNRFADLTNEEYRAKYLGTKIDHKRRIAKTRNNRYASQIGDKLPEYVDWRKEGAVVQVKDQGSCGSCWAFSTVAAVEGINKLVTGDLISLSEQELVDCDTKYNEGCNGGLMDYAFQFIINNGGIDTEEDYPYHAVDGQCDHYRKNAKVVTIDGYEDVPANDEKALKKAVANQPVSVAIEAGGREFQLYVSGVFTGRCGTALDHGVAAVGYGTENGVDYWIVKNSWGSSWGEEGYIRMERNVGKTNTGKCGIAMQASYPTKKGLNPPKPKPSPPSPVKPPTVCDDYYSCPESTTCCCVYEYGKYCFAWGCCALEAATCCDDHYSCCPHDYPICNLDAGTCLMSETTPFGVKAMMRFPAKPHFSFGVAPME 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01018 464 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Accr4g01018 464 MobiDBLite consensus disorder prediction 353 373 - -
Accr4g01018 464 SMART GRAN_2 377 434 IPR000118 -
Accr4g01018 464 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Accr4g01018 464 FunFam Cysteine protease 1 374 437 - -
Accr4g01018 464 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Accr4g01018 464 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 43 352 IPR013128 GO:0008234
Accr4g01018 464 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Accr4g01018 464 CDD Peptidase_C1A 139 353 IPR039417 -
Accr4g01018 464 MobiDBLite consensus disorder prediction 358 373 - -
Accr4g01018 464 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Accr4g01018 464 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Accr4g01018 464 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Accr4g01018 464 Gene3D Granulin 374 436 IPR037277 -
Accr4g01018 464 Pfam Granulin 388 435 IPR000118 -
Accr4g01018 464 SMART Inhibitor_I29_2 51 107 IPR013201 -
Accr4g01018 464 FunFam Cysteine protease 1 27 356 - -
Accr4g01018 464 SUPERFAMILY Cysteine proteinases 42 354 IPR038765 -
Accr4g01018 464 Gene3D Cysteine proteinases 31 356 - -
Accr4g01018 464 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Accr4g01018 464 SUPERFAMILY Granulin repeat 374 408 - -
Accr4g01018 464 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01018 Accr-Chr4 9684825 9687610 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01018 K25900 - cave:132183848 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01018 3 11471573 11474533 Accr4g01018 4 9684825 9687610 CCT
Accr4g01018 4 9684825 9687610 Accr4g01018 4 9684825 9687610 ECH