Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01018 ATGGCTTCGTCTCCGTCGTCTCTGATGCTCCTCCTCTTTTTTGCCGTCTTCGCCCTGTCGTCCGCCTTGGACATGTCGATCATCTCCTACGACGGAAATCAAGCCGACGGCTCAAGCTGGAGGACCGATGAGGAGGTTAGGGACATGTACGAGCACTGGCTTTTGCAACATGGCAAGGTCTTCAACGGCTTGGGTGAGAAAGACAAGAGGTTTCAGATCTTCAAGGACAACCTCAGGTTCATCGATGAGCGCAACGCCGAGAACCGGACCTACAAGCTCGGATTGAATCGGTTTGCCGATCTGACCAACGACGAGTTCCGGGCCAAGTATCTTGGAGCCAGGATCGATCCCAAGAGAAGGATTGCCAAGACCAGGAGCAACCGTTACGCTCCACGTGTCGGTGACAAATTGCCGGATTCTGTCGATTGGAGGAAGGAAGGCGCCGTGGTCGAGGTCAAAGACCAAGGAAGTTGCGGGAGCTGCTGGGCTTTTTCAACTGTCTGTGCAGTGGAAGGAATTAACAAGATAGTGACGGGAGATTTAATTTCACTATCAGAGCAAGAGCTGGTCGACTGTGATACAACATATAATGAAGGATGCAACGGTGGGCTCATGGACTATGGCTTTCAGTTCATCATCAACAACGGTGGCATTGACACCGAAGAAGATTACCCCTATCGTGCTGTTAATGGCAGATGTGACACATACAGGAAAAATGCTAGGGTCGTCTCAATTGATAGCTACGAGGACGTTCCTGTGAATGACGAGGCGGCGTTGAAAAAGGCTGTAGCACATCAGCCAGTGAGCGTTGCCATTGAAGGTGGTGGCAGGGAATTCCAGTTATATGTATCCGGCGTCTTCACTGGAGCTTGTGGAACATCATTGGATCATGGTGTCACAGCTGTGGGATACGGTACAGAAAATGGAGTTGATTACTGGATAGTTAGAAACTCATGGGGAAAGAGCTGGGGAGAGGGCGGGTATGTGAGATTGGAACGTAATTTGGCTGCAAGCACCGCTGGAAAATGTGGAATTGCAATGGAATCATCTTACCCAATCAAGAAAGGCCCAAATCCTCCTAACCCTGGACCATCACCTCCTTCACCTGTAAAGCCACCAACTGTTTGTGATAATTACTACAGTTGTGCTGAGAGCACTACTTGCTGCTGCGTATACGAATATGGTAAGTATTGCTTTGCCTGGGGATGTTGTCCTCTTGAAGCTGCCACCTGCTGTGACGACCACTCCAGTTGCTGCCCTCACGACTATCCCATCTGCAACCTTGAACAGGGCACTTGTCTCTTGAACAAGAACAGTCCATTTGGAGTGAAGGCTATGAAGCGTGTTCCTGCTAAACCCCACTGGGCTTTTGGTGCTACGAACAAAGTAAGCAGTGCTTAA 1401 0.4989 MASSPSSLMLLLFFAVFALSSALDMSIISYDGNQADGSSWRTDEEVRDMYEHWLLQHGKVFNGLGEKDKRFQIFKDNLRFIDERNAENRTYKLGLNRFADLTNDEFRAKYLGARIDPKRRIAKTRSNRYAPRVGDKLPDSVDWRKEGAVVEVKDQGSCGSCWAFSTVCAVEGINKIVTGDLISLSEQELVDCDTTYNEGCNGGLMDYGFQFIINNGGIDTEEDYPYRAVNGRCDTYRKNARVVSIDSYEDVPVNDEAALKKAVAHQPVSVAIEGGGREFQLYVSGVFTGACGTSLDHGVTAVGYGTENGVDYWIVRNSWGKSWGEGGYVRLERNLAASTAGKCGIAMESSYPIKKGPNPPNPGPSPPSPVKPPTVCDNYYSCAESTTCCCVYEYGKYCFAWGCCPLEAATCCDDHSSCCPHDYPICNLEQGTCLLNKNSPFGVKAMKRVPAKPHWAFGATNKVSSA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01018 466 Gene3D Granulin 373 435 IPR037277 -
Accr3g01018 466 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Accr3g01018 466 CDD Peptidase_C1A 138 352 IPR039417 -
Accr3g01018 466 SMART Inhibitor_I29_2 50 106 IPR013201 -
Accr3g01018 466 SUPERFAMILY Cysteine proteinases 41 353 IPR038765 -
Accr3g01018 466 FunFam Cysteine protease 1 373 436 - -
Accr3g01018 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 351 IPR013128 GO:0008234
Accr3g01018 466 SUPERFAMILY Granulin repeat 373 407 - -
Accr3g01018 466 SMART pept_c1 137 353 IPR000668 GO:0006508|GO:0008234
Accr3g01018 466 Pfam Granulin 387 434 IPR000118 -
Accr3g01018 466 FunFam Cysteine protease 1 26 355 - -
Accr3g01018 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 295 305 IPR025660 -
Accr3g01018 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
Accr3g01018 466 Gene3D Cysteine proteinases 31 355 - -
Accr3g01018 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 312 331 IPR025661 -
Accr3g01018 466 SMART GRAN_2 376 433 IPR000118 -
Accr3g01018 466 Pfam Papain family cysteine protease 137 353 IPR000668 GO:0006508|GO:0008234
Accr3g01018 466 PRINTS Papain cysteine protease (C1) family signature 312 318 IPR000668 GO:0006508|GO:0008234
Accr3g01018 466 PRINTS Papain cysteine protease (C1) family signature 297 307 IPR000668 GO:0006508|GO:0008234
Accr3g01018 466 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01018 Accr-Chr3 11471573 11474533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01018 K25900 - gmx:100791699 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01018 3 11471573 11474533 Accr4g01018 4 9684825 9687610 CCT
Accr3g01018 3 11471573 11474533 Accr3g01018 3 11471573 11474533 ECH