Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00326 ATGTCTCCCCTTACAGCCAGTGACTTGCAGCGAATATTTGAGAAACTGGACATGAACGAGGATGGGTTGGTGAGCCTTGAAGAGCTCAAGTGGCTGCTGGACAGGATAGGTTATGAGTTTAGCCCCGAAGAACTTGAATGTTTCGTCGGGAAACAGAAGCTGGACCTGAATGAATTCTTGCTCTTCTGGGAGTCCATATCGGAGAAGAACAGTAACATAGGAGATGACGTGGAGGGCGACCTGGCGAAAGCCTTCGAGGTGTTTGACTTAGACGGAGATGGCTTCATCACCGGCCCTGAACTGGAGTGCGTGCTGAAGAGGCTTCGCTTATGGGACGAACAGAATGGAAGGGACTGCTCCGCCATGATTTGCGCCTTCGACTCCAACTCAGATGGCCGCCTTGATTTCCAGGAGTTCAAGAACATGATGCTCCTTACCTCTTCTTCCTGA 450 0.5089 MSPLTASDLQRIFEKLDMNEDGLVSLEELKWLLDRIGYEFSPEELECFVGKQKLDLNEFLLFWESISEKNSNIGDDVEGDLAKAFEVFDLDGDGFITGPELECVLKRLRLWDEQNGRDCSAMICAFDSNSDGRLDFQEFKNMMLLTSSS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00326 149 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Accr4g00326 149 Pfam EF hand 9 30 IPR002048 GO:0005509
Accr4g00326 149 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Accr4g00326 149 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Accr4g00326 149 SMART efh_1 8 36 IPR002048 GO:0005509
Accr4g00326 149 SMART efh_1 80 108 IPR002048 GO:0005509
Accr4g00326 149 SMART efh_1 118 146 IPR002048 GO:0005509
Accr4g00326 149 Gene3D - 1 145 - -
Accr4g00326 149 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Accr4g00326 149 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 143 - -
Accr4g00326 149 CDD EFh 80 143 IPR002048 GO:0005509
Accr4g00326 149 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Accr4g00326 149 FunFam Calmodulin A 3 146 - -
Accr4g00326 149 Pfam EF-hand domain pair 81 143 IPR002048 GO:0005509
Accr4g00326 149 SUPERFAMILY EF-hand 7 145 IPR011992 -
Accr4g00326 149 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00326 Accr-Chr4 3156310 3156759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00326 2 144 EF-hand Containing Proteins AT1G21550 48.667 1.43e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00326 K13448 - qsa:O6P43_015119 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00274 3 2970387 2970848 Accr4g00326 4 3156310 3156759 CCT
Accr4g00326 4 3156310 3156759 Accr4g00326 4 3156310 3156759 ECH