Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00274 ATGTGTTCCCTAAGCCGGGATGACTTGCAGAGGATTTTTGAGAAGCTGGAAAAGGAGGAGGATGGTTATGTTAGCCTCGAAAACCTAAAGAGACTAATGGAGAATATAGGTTTCAGTTTTGGAGCAGAGGAGGTTGAGTGTCTGGTGGGGAAGAAGAGCCTTAACTTGGATGAGTTCTTGACGTTTTGCGAGTCCATGTCGAGTAGCAGTAATAGCAGTGGAGAGAGCAGAGAAGGTCAAGAAGAAGAGAGAGAGCTGGTGAAGGCGTTCGAGGTGTTTGACATGGACGGAGATGGATTCATCAGCAGCCAAGAGGTAGAGAGTGTGCTCAAGAGGCTTGGCTTGTGGGACCCCAAGAGCTGCAGAGATTGCGCCTCCATGATCGGCGTTTATGACTCCAATTCCGATGGCCTCCTTGATTTCCAGGAATTTAAGAACATGATGCTGCTTACCATCCCTTGA 462 0.4827 MCSLSRDDLQRIFEKLEKEEDGYVSLENLKRLMENIGFSFGAEEVECLVGKKSLNLDEFLTFCESMSSSSNSSGESREGQEEERELVKAFEVFDMDGDGFISSQEVESVLKRLGLWDPKSCRDCASMIGVYDSNSDGLLDFQEFKNMMLLTIP 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00274 153 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Accr3g00274 153 PANTHER CALCIUM BINDING PROTEIN 54 148 - -
Accr3g00274 153 Gene3D - 5 66 - -
Accr3g00274 153 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Accr3g00274 153 Pfam EF-hand domain pair 85 148 IPR002048 GO:0005509
Accr3g00274 153 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Accr3g00274 153 Gene3D - 67 151 - -
Accr3g00274 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Accr3g00274 153 ProSiteProfiles EF-hand calcium-binding domain profile. 119 153 IPR002048 GO:0005509
Accr3g00274 153 CDD EFh 85 148 IPR002048 GO:0005509
Accr3g00274 153 SMART efh_1 8 36 IPR002048 GO:0005509
Accr3g00274 153 SMART efh_1 85 113 IPR002048 GO:0005509
Accr3g00274 153 SMART efh_1 123 151 IPR002048 GO:0005509
Accr3g00274 153 SUPERFAMILY EF-hand 7 150 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00274 Accr-Chr3 2970387 2970848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00274 2 149 EF-hand Containing Proteins AT1G21550 41.060 2.96e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00274 K13448 - qsa:O6P43_015119 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00274 3 2970387 2970848 Accr4g00326 4 3156310 3156759 CCT
Accr3g00274 3 2970387 2970848 Accr3g00274 3 2970387 2970848 ECH