Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00303 ATGATTGGCAAGGAGAACTTGAGGACGGAGGACTTGAACTTATGCTTTCAGCAACTTATGATGGTTGCAGGCGGTGGTGACTGTGGAAACAGTACTAGAGGAGTGAAAATGGAAGCCGGGGTGATCACCGAATGGAAGGATATTCCGGCGGAGCTTTTGATGCAGATTCTGTCCCTAACTGATGATAATCAGACGGTGATCGCAGCTTCTGGAGTCTGCCGTGGATGGAGAGATGCGGTTTGCTTCGCCCTTTCCCGTTTGTCACTCTCTTGGTGCAGGAAGAACATGAATAACTTGGTCCTATCACTTATGCCTAAATTTACAGAACTACAAATTTTAGTCCTTCGTCAAGACCAACCTCAACTAGAGGATAATGCTGTCGAGACTATCTCAAATTTCTGTCACGACCTGCAGATGCTGGATCTCAGCAGAAGTTTCAGGCTTACTGATCGGTCTCTGTATGCCTTAGCCCATGGGTGCCCTGATCTTACAAATCTGAACATCAGTGGGTGCACGGCATTTAGCGATGGTGCTCTGGCATACCTAGCCAGTTTATGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGCATCAGACCATGCATTACAGGCTATAGGACATTATTGCAACCAATTACAAATTTTGAACCTTGGATGGTGTGAAAATGTTAGCGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAACACTTAACTTGTGTGGTTGTGTCCGTATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGGTGTCCCCATCTGAGATCCCTTGGGCTGTACTACTGTCGAAACATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATCACAGGATGTGGGGATCTGTGAAAGGAGTTAATGAGGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGCACAGCACTCACACCCTCTGCTGTTCAGGCCGTGTGTGATTCCTTCCCGGCGCTTCACACCTGCTCTGGCAGGCATTCACTCATCATGAGTGGCTGTTTGAGCCTGACCTCTGTGCATTGTGCTTGTGCTGTGCATTCGCATCGAGCAATGGCCTCTCTTCCATATCAAGCTCATTGA 1128 0.4672 MIGKENLRTEDLNLCFQQLMMVAGGGDCGNSTRGVKMEAGVITEWKDIPAELLMQILSLTDDNQTVIAASGVCRGWRDAVCFALSRLSLSWCRKNMNNLVLSLMPKFTELQILVLRQDQPQLEDNAVETISNFCHDLQMLDLSRSFRLTDRSLYALAHGCPDLTNLNISGCTAFSDGALAYLASLCRKLKCLNLCGCVRAASDHALQAIGHYCNQLQILNLGWCENVSDDGVTSLAAGCPDLRTLNLCGCVRITDESVIALANGCPHLRSLGLYYCRNITDRAMYSLAHSKVNHRMWGSVKGVNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLSLTSVHCACAVHSHRAMASLPYQAH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00303 375 Gene3D Ribonuclease Inhibitor 41 301 IPR032675 -
Accr4g00303 375 FunFam F-box protein SKP2B 81 299 - -
Accr4g00303 375 CDD F-box_AtSKP2-like 44 92 - -
Accr4g00303 375 PANTHER UNCHARACTERIZED 236 354 - -
Accr4g00303 375 SMART LRR_CC_2 81 106 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 213 238 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 306 331 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 107 133 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 160 185 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 186 212 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 239 264 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 134 159 IPR006553 -
Accr4g00303 375 SMART LRR_CC_2 265 290 IPR006553 -
Accr4g00303 375 Pfam F-box-like 46 80 IPR001810 GO:0005515
Accr4g00303 375 SUPERFAMILY RNI-like 80 334 - -
Accr4g00303 375 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Accr4g00303 375 Pfam Leucine Rich repeat 265 288 IPR001611 GO:0005515
Accr4g00303 375 Pfam Leucine Rich repeat 213 236 IPR001611 GO:0005515
Accr4g00303 375 SUPERFAMILY F-box domain 39 81 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00303 Accr-Chr4 2948813 2951386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00303 K03875 - gmx:100797840 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00263 3 2755626 2757559 Accr4g00303 4 2948813 2951386 CCT
Accr4g00303 4 2948813 2951386 Accr4g00303 4 2948813 2951386 ECH