Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00462 ATGGAGATCGGATGGCCGACTAAGGTGCGCCATGTAGCGCACGTCACATTTGATAGATTCAATGGTTTCTTGGGTTTGCCTGACGAATTCGAACCTGAAGTGCCCAGAAGGCCTCCCAGTGCCAGTGCAACTGTCTTTGGAGTTTCAACAGAATCCATGCAGCTATCGTTTGACTCGAGAGGAAACAGTGTGCCAACCATCCTGTTATTAATGCAAAGTCGCCTGTATAATGAAGGAGGTTTGCAGGCAGAGGGCATATTCAGAATTAATGCAGACAATAGTCAAGAGGAATATGTTAGGGAACAATTAAATAGGGGAGTTGTCCCTGAAGGCATTGATGTACATTGCTTAGCAGGACTTATCAAGGCTTGGTTTAGGGAACTGCCAATAGGAATTCTGGATTCCTTATCACCTGAGCAGGTAATGAAAAGCCAGACTGAAGAAGAATGTGCAGAACTAGCAAGGAATCTACCTCCCACTGAAGCTTCCCTCTTGGACTGGGCAATCAATCTCATGGCTGACGTTGCCCAACATGAACATCTCAATAAGATGAATGCACGCAACATTGCAATGGTTTTTGCCCCAAATATGACTCAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTGATACTAAGGACACTGAGGGAAAGGAAGGATTCTATAGTAGAATCTTCACCTGGACCTGGCTTTTACTTAGAGCGCTCTGATGATGATAATAGTCACCAAAGCCCTATAATACACTTATGCCAGCCAGATGCTGCTAAAGATAATGAAGAGGCTCAGGCCCTTACAACTGAAAAAACTGTCTCAGAAAGTAACACTGCTTCCGATTCCCTCCAAGAGACTACTAACTTAACTGGAGGAGAATCTGGGAGTTTAGGAACCTCTTCTGAAAACCCAATATGTAATGAGGATTTGTATTGTGAGTATCCACCAAAAGGAAATGTTGGGAAGAGCAAGACAGGCCAATCAAGCAATTCAAATTCAAGAAAGGGATCGAAGAAAAGCAGAGACCAGCAACATTCAAACCATCAAGGAACAATGAATGTTGAGAAAACTAAGGGAAATGGTAAAATGAGTCGCATAAATTCAAGATCTGAGAAGGCAGAACCATGGAGGTGA 1155 0.4338 MEIGWPTKVRHVAHVTFDRFNGFLGLPDEFEPEVPRRPPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQSRLYNEGGLQAEGIFRINADNSQEEYVREQLNRGVVPEGIDVHCLAGLIKAWFRELPIGILDSLSPEQVMKSQTEEECAELARNLPPTEASLLDWAINLMADVAQHEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRTLRERKDSIVESSPGPGFYLERSDDDNSHQSPIIHLCQPDAAKDNEEAQALTTEKTVSESNTASDSLQETTNLTGGESGSLGTSSENPICNEDLYCEYPPKGNVGKSKTGQSSNSNSRKGSKKSRDQQHSNHQGTMNVEKTKGNGKMSRINSRSEKAEPWR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00462 384 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 -
Accr13g00462 384 CDD RhoGAP 65 221 - -
Accr13g00462 384 Gene3D Rho GTPase activation protein 36 232 IPR008936 -
Accr13g00462 384 CDD CRIB 1 41 - -
Accr13g00462 384 MobiDBLite consensus disorder prediction 232 255 - -
Accr13g00462 384 MobiDBLite consensus disorder prediction 267 309 - -
Accr13g00462 384 SMART RhoGAP_3 62 225 IPR000198 GO:0007165
Accr13g00462 384 SMART PBD_5 3 37 IPR000095 -
Accr13g00462 384 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 233 IPR000198 GO:0007165
Accr13g00462 384 PANTHER MKIAA1688 PROTEIN 1 351 IPR044785 GO:0005096
Accr13g00462 384 MobiDBLite consensus disorder prediction 324 384 - -
Accr13g00462 384 Pfam RhoGAP domain 65 199 IPR000198 GO:0007165
Accr13g00462 384 MobiDBLite consensus disorder prediction 274 309 - -
Accr13g00462 384 FunFam Rho GTPase-activating protein 5 33 226 - -
Accr13g00462 384 Gene3D CRIB domain 1 33 IPR036936 -
Accr13g00462 384 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00462 Accr-Chr13 4703091 4706909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00462 - K20642 gmx:100784019 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03346 1 69894955 69898184 Accr13g00462 13 4703091 4706909 CCT
Accr13g00462 13 4703091 4706909 Accr13g00462 13 4703091 4706909 ECH