LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g00545	ATGCTGAGGCTAGTTTCGAAGAGAATTTTGGGAGCAGCGTCGCGGGAGGTGCCGACGCCGGCGCTGCAGGTTCTTCCCCGATTCTACCTTGAGAGGGTTGTTGGATCCTTCGACAAGAATGACCCCACCGTCGGCACAGGTCTGGTTGGGGCACCTGCATGTGGTGATGTCATGAAACTACAGATTAAGGATGAGGAAAAGACCGGAAAGATTGTTGATGCTTGCTTCAAGACCTTCGGCGGTGGTTCAGCTACTGCGTCTTCATCTGTGGGGAAGCAAATGGAGGGAGTTTCATCCATCAAAAACATAGAAATTGTAAAGCACCTGTCATCTCATCCATTTAATCTTCACCGCCTCATGTTCGCTAAGGATGCCATCAAAGCAGGTGTTAAAAGCTATGAAGCTAAGCGAGGCTTGGCAACAGCCACTGAGGCAACATCTGGAGAGTCTGCAGCCACTCCAGTCATGGCGCCTGTGACAAATAGACTTCGCCCGATATCTCCTCATCTTTCTATTTATAAGCCCCAGTCCTCTTCCATGACTTCAATTTTTAATAGAATCTCAGGAGCTACCCTAGCAGTTATGGTTTTGGGGTTTTACATTCTTTGTATGAAAATGCCTCTGATTTGCTTCACCTTTGCTGAATTCTACCAATTTTTCCATTTCTCAGCAAATTTCAGCGTAATCTGTGCCCAAATTGCTGCAGTTGCCATGTCCTATCATTTGTATGATGGGATCAAGAGATTACTGCATTAG	756	0.4656	MLRLVSKRILGAASREVPTPALQVLPRFYLERVVGSFDKNDPTVGTGLVGAPACGDVMKLQIKDEEKTGKIVDACFKTFGGGSATASSSVGKQMEGVSSIKNIEIVKHLSSHPFNLHRLMFAKDAIKAGVKSYEAKRGLATATEATSGESAATPVMAPVTNRLRPISPHLSIYKPQSSSMTSIFNRISGATLAVMVLGFYILCMKMPLICFTFAEFYQFFHFSANFSVICAQIAAVAMSYHLYDGIKRLLH	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g00545	251	CDD	SQR_TypeC_SdhC	164	250	IPR014314	GO:0000104\|GO:0006099\|GO:0009055\|GO:0045281
	Accr12g00545	251	Gene3D	-	43	138	-	-
	Accr12g00545	251	Gene3D	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	151	251	IPR034804	GO:0016020
	Accr12g00545	251	SUPERFAMILY	SufE/NifU	28	139	-	-
	Accr12g00545	251	Pfam	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	161	250	IPR000701	GO:0016627
	Accr12g00545	251	Pfam	NifU-like N terminal domain	23	137	IPR002871	GO:0005506\|GO:0016226\|GO:0051536
	Accr12g00545	251	PANTHER	IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG	28	145	IPR002871	GO:0005506\|GO:0016226\|GO:0051536
	Accr12g00545	251	CDD	IscU_like	34	107	IPR002871	GO:0005506\|GO:0016226\|GO:0051536
	Accr12g00545	251	SUPERFAMILY	Fumarate reductase respiratory complex transmembrane subunits	157	250	IPR034804	GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g00545	Accr-Chr12	5101189	5103732	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g00545	K22068		-	rvl:131335847	230.335

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr8g00177	8	2504767	2506243	Accr12g00545	12	5101189	5103732	CCT
	Accr12g00545	12	5101189	5103732	Accr12g00545	12	5101189	5103732	ECH