Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00520 ATGAAGGCGACAATAAGGTACTTAGCAGGAATTGCTGGCCCAAGTGGTTTTGGCTCTAATTCCACAGCTGAACAAGTCACTCAACGCTTCTCTTCTTCAATGCTTCCTTCTCATCTCACTGCTCTCATTACTGGGGCGACTTCTGGGATTGGAGCTGAAACGGCGAGAGCGTTGGCGAAGAGAGGAGTGAGAGTAGTGATTGGTGCGAGGAACATGAAGAAGGCAAGGGAAGTGAGAGAGAATATGCTCAAAGAGAGTCCAAATGCTGAGGTTATATTGCTTGAGATTGATCTCAGCTCTTTTGCTTCTGTTCAGAGATTTTGTTCTGAGTTCTTGGCCCTACAACTTCCTCTCAACATTCTCATAAACAATGCTGGGATATATTCTCAGGAGTTGGAGTTCTCGGAGGAGAAAATAGAGATGACATTTGCCACAAATTACCTTGGACATTTTTTGTTAACGGAAATGCTATTGGATAGAATGATAGAAACAGCAGAGAAGACGGGTATCGAAGGAAGAATAATAACTGTGTCTTCAATGATCCATAGCTGGGTTAAAAGAGAGACTTTTCAATTCAAGGACATGATTAAAGGAAGAAACTATAATGGCACGCGTGCGTATGCCCAGTCAAAACTGTCCGGTATTTTGCATGCCAAGGAAATGGCCAAGCAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTCTGAAAGCTCACAAGAGTCTCATAACAGATTCTTTCTTCTTCCTCGCATCCAAGTTACTCAAATCCACTTCTCAGGGAGCAGCAACGACATGTTATGTAGCGTTGAGCCCAGAAACAGAAGGAGTGAGTGGGAAATACTTCTTAGACTGCAATGAGAGTAACTGTTCAAGTTTAGCCAATGACGAATCTGAAGCTCACAAGCTATGGAACAGCACACGTTCCCTTCTTCACAAACGATTACGATGTCGCAAACCCTCTGCTGTTTGA 1005 0.4348 MKATIRYLAGIAGPSGFGSNSTAEQVTQRFSSSMLPSHLTALITGATSGIGAETARALAKRGVRVVIGARNMKKAREVRENMLKESPNAEVILLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIYSQELEFSEEKIEMTFATNYLGHFLLTEMLLDRMIETAEKTGIEGRIITVSSMIHSWVKRETFQFKDMIKGRNYNGTRAYAQSKLSGILHAKEMAKQLKARNARVTINVVHPGIVKTAILKAHKSLITDSFFFLASKLLKSTSQGAATTCYVALSPETEGVSGKYFLDCNESNCSSLANDESEAHKLWNSTRSLLHKRLRCRKPSAV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00520 334 PANTHER RETINOL DEHYDROGENASE 14 321 - -
Accr12g00520 334 Pfam short chain dehydrogenase 40 181 IPR002347 -
Accr12g00520 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 299 IPR036291 -
Accr12g00520 334 CDD retinol-DH_like_SDR_c_like 40 315 - -
Accr12g00520 334 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Accr12g00520 334 PRINTS Glucose/ribitol dehydrogenase family signature 116 127 IPR002347 -
Accr12g00520 334 PRINTS Glucose/ribitol dehydrogenase family signature 166 182 IPR002347 -
Accr12g00520 334 PRINTS Glucose/ribitol dehydrogenase family signature 40 57 IPR002347 -
Accr12g00520 334 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Accr12g00520 334 Gene3D - 37 327 - -
Accr12g00520 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 127 IPR002347 -
Accr12g00520 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Accr12g00520 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00520 Accr-Chr12 4858076 4860815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00520 19 249 Acyl Lipid Metabolism Gene Families AT1G63380 29.630 1.01e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00520 - K11153 pcin:129309518 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00206 8 2800268 2803699 Accr12g00520 12 4858076 4860815 CCT
Accr12g00520 12 4858076 4860815 Accr12g00520 12 4858076 4860815 ECH