Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00352 ATGGGTTGTTTCAGCTCTAAAGTAAGAAGGCAATTTCCTGGGCATGAGGATCCTGTGACTCTTGCATCACAGACAGCTTTCACTGTTAGCGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGTGGTTCTGTTGTTGATGATGGACTAATAAGCAAGGAAGAATTTCTATTGGCAATTTTCAAGAATCGGAAGAGGGAGAATCTCTTTGCAAATCGGATTTTTGATCTCTTTGATGTTAAAAAGAAGGGAGTCATTGATTTTGGTGACTTTGTTAGATCACTCAATGTGTTCCACCCAAATGCACCACAAGAAGATAAGATAGATTTTTCCTTTAGGCTCTACGACTTGGACAGCACGGGCTTCATAGAGCGACGGGAGGTCAAGCAAATGCTAATTGCACTTCTTTGCGAGTCTGAAATGAAGCTGGCGGATGAGACCATTGAAGTAATTCTTGATAAGACTTTTTTGGACGCTGATCTGGACAAAGATGGGAAAATAGACAGGGCTGAATGGGAAGACTTCGTTTTAAAGAATCCCTCTCTACTAAAAATCATGACCCTACCCTACCTGAGGGACATAACAACGACTTTCCCAAGTTTTGTATTTAATTCTGAGGTTGATGAAATTGCTACTTGA 642 0.4081 MGCFSSKVRRQFPGHEDPVTLASQTAFTVSEVEALFELFKSISGSVVDDGLISKEEFLLAIFKNRKRENLFANRIFDLFDVKKKGVIDFGDFVRSLNVFHPNAPQEDKIDFSFRLYDLDSTGFIERREVKQMLIALLCESEMKLADETIEVILDKTFLDADLDKDGKIDRAEWEDFVLKNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEIAT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00352 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Accr10g00352 213 PRINTS Recoverin family signature 75 96 - -
Accr10g00352 213 PRINTS Recoverin family signature 122 140 - -
Accr10g00352 213 PRINTS Recoverin family signature 168 188 - -
Accr10g00352 213 FunFam calcineurin B-like protein 3 17 210 - -
Accr10g00352 213 Pfam EF-hand domain pair 107 174 IPR002048 GO:0005509
Accr10g00352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Accr10g00352 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Accr10g00352 213 Gene3D - 17 211 - -
Accr10g00352 213 PANTHER CALCINEURIN B 1 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Accr10g00352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Accr10g00352 213 SMART efh_1 108 136 IPR002048 GO:0005509
Accr10g00352 213 SMART efh_1 152 180 IPR002048 GO:0005509
Accr10g00352 213 SMART efh_1 71 99 IPR002048 GO:0005509
Accr10g00352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Accr10g00352 213 SUPERFAMILY EF-hand 21 203 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00352 Accr-Chr10 5671815 5675075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00352 1 213 EF-hand Containing Proteins AT4G17615 84.038 1.60e-132 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00352 K06268 - qsu:112022362 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00561 9 6450456 6452914 Accr10g00352 10 5671815 5675075 CCT