Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00335 ATGGCCGTTCAGGCTCAATATCCTTCTCATCTTCTCCTCCTTCACCACAACACCAGCAACCTTCAAGCAGATTATGAACAAGCTCTTCATCAATCTCACACGCCATTCACTACACCAGATATTACTAAGCCTACCCCACCACCTGTTGTGAATTCTGCTTCTCTGCAATCTCCTCAATTGCTCAACCACCACCATCACAATACCGTCTCCACCGGCCTCCGCTTATTCTCATCCGCCCACCACCAACGACCACCTCACTTACCTCACCACAGCCAACCACAACAAGAACAGACATCTCAACATGATGTCTCCCCATCTCATCACTCTACTTTATCAGTTTTTTCTTGTCAAGATTATCTTCTCTCCCAAATCCACAGACAACGTGAAGAAATTAACCAATTCCTTCAAGCACAGGAAGCGGAATTGCATCGAACATTAGCGGAGAAAAGGCAGAGACATTACCGAGAGCTTCTCACCGTGGCGGAAGAAGCCGTGGCTCGGCGGCTGAGGGAGAAAGACCTGGAGGTGGAGACAGTCACGCGCATGAACGCCGAGCTAGAGGCACGCGCCGCTCAACTCAGCTCCGAAGCACGGCTTTGGCAGGCAAAGGCAAAAGCACATGAAGCAACCGCAGCTTCCTTGCAAGCCCAACTGCAACAGGCCATGATGAACGGTACGGCCCAAGAAAGGAGAGACGACTATGCGCTATCGTGCGCCGCCGGAGCCGACGACGCCGAGTCGGCTTATGTTGACCCGGACAGAGTCGAACCGACCGGACCGCAATGCAGAGGGTGTGGCCAGCGGGTAGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCTTGTGCCCCAAATGTGACGTCCATTACCGAGCATGTCCGGTTTGCCTTTCCTTCAAAGATTCAACCGTTGAGGTTTTCTTAACTTAG 930 0.5247 MAVQAQYPSHLLLLHHNTSNLQADYEQALHQSHTPFTTPDITKPTPPPVVNSASLQSPQLLNHHHHNTVSTGLRLFSSAHHQRPPHLPHHSQPQQEQTSQHDVSPSHHSTLSVFSCQDYLLSQIHRQREEINQFLQAQEAELHRTLAEKRQRHYRELLTVAEEAVARRLREKDLEVETVTRMNAELEARAAQLSSEARLWQAKAKAHEATAASLQAQLQQAMMNGTAQERRDDYALSCAAGADDAESAYVDPDRVEPTGPQCRGCGQRVASVVVLPCRHLCLCPKCDVHYRACPVCLSFKDSTVEVFLT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00335 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 309 IPR013083 -
Accr10g00335 309 Coils Coil 169 224 - -
Accr10g00335 309 MobiDBLite consensus disorder prediction 80 108 - -
Accr10g00335 309 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 244 308 - -
Accr10g00335 309 PIRSF SBP1_RNase_bind 1 309 IPR017066 -
Accr10g00335 309 Pfam Zinc finger, C3HC4 type (RING finger) 261 297 - -
Accr10g00335 309 Coils Coil 132 152 - -
Accr10g00335 309 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 69 306 IPR017066 -
Accr10g00335 309 MobiDBLite consensus disorder prediction 88 108 - -
Accr10g00335 309 ProSiteProfiles Zinc finger RING-type profile. 262 296 IPR001841 -
Accr10g00335 309 CDD mRING-HC-C3HC5_CGRF1-like 262 296 - -
Accr10g00335 309 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00335 Accr-Chr10 5497079 5498362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00335 262 296 Miscellaneous Gene Families AT2G21380 40.000 7.50e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00335 K19042 - gmx:100797727 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00550 9 6297300 6298647 Accr10g00335 10 5497079 5498362 CCT
Accr10g00335 10 5497079 5498362 Accr10g00335 10 5497079 5498362 ECH