Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00008 ATGCCTGCAACTTTTTCACCCAAGTCAGCTCTTGAAAGATCTGATGGTGCTGGGTCTTTTAAGAAGAGAGCTCCAAATAAGTTCAGGATTTCTTTGTCAAGAAAGGGTAGGAGATCCAGCAAGGTCATGTCTGTTGAAATCGAGGATATCCGTGATGCTGAAGAGTCTGCAGTTGTTGATAAGTTCCGTGAACTTCTTCTATCAGAAAACCTTCTCCCTGCTAAGCAAGATGATTATCATACGATGCTGAGATTTCTTAAGGCCAGGAAATTTGATATTGAGAAAACAAAGCAAATGTGGTCCGACATGCTCAAGTGGAGAAAGGAATTTGGTACTGACACAATTATGGAGGATTTTGAATTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTGGATAAAGATGGACGACCCGTGTACTTCGAGAGATTAGGTCTAGTAGACTCAAACAAGATGATGCAAGTGACAACCTTAGAACGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGTTCAATTGCTGCAAAGAAGCACATTGATCAAAGTACAACCATCCTGGATGTGCAAGGAGTGGGGCTCAAGAACTTTAGCAAATCTGCTAGAGACCTTGTTACTGCCCTTCAAAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCTGGTTCTGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGACCCTAAAACCACGGCAAAAATTAATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCAAGTGAATTGCCAGACTTTTTTGGAGGCACTTGCACCTGTGCTGATCAAGGAGGTTGTATGCTTTCTGATAAGGGCCCATGGAAGAATGAAGAAATATTAAGGAAGGTTCTAAATGGTGACCATAAAAGTTCAAGCAAAAGTGAGTTACCTTTGGTGGAAGAAGATAAGACAGTGTCGGAGGCAGTTCCAGTGTCTGAGGCAACACTAGTTTCTGAGGAGGTGCCAGTGTCTGAAGAAGTAGTGCCTACCCCTAACCACATCAGTCACTTTGAAGAAACTCCAGTGCATAATGAGGTCCCTGCAATCGAAGCTTGTAAATCTGAGGACTTGGTCCCAGTGTCTAATAAAATGGTCCCAGTGTCTGATAAAATGGCTATGAAAAAAGTTGAAGACAGCGAGAGATTAGCCTTATCAAAAGTTGGAATAGATACATTCAACAATATGGCTGATGCTTACAAGCGCCATGAGAAGTTCGACAACCAGCTTTTCACTGGGGTCATGGCCTTTGTTATGGGAATCCTGACAATGGTCAAAATGACACGAAACATGCCCAAGAACATCACCAATGGCAACTTCTCCAACCCTACTAATTTCTCTGCTGAGCCCACGTATACAGGGCAGGCTCCTGCTAGTAACAACGAGCCCATGCCTACCATCTCTGCTGAAGAATTTATGGCTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAATATACCTGCTTACATGCCTCCCGAGAAGGAGGAGATGCTCGTTGCTGCTATGAACAGAGCCGATGTATTGGAAAAAGAACTCATGGCTACCAAGAAGTCCTTGGAGGATTCACTCGCCCAACAAGAGGAGCTTTTAGCTTATATTGACAAGAAGAAGAAGAAGAAATGGTTTGGATGA 1749 0.4248 MPATFSPKSALERSDGAGSFKKRAPNKFRISLSRKGRRSSKVMSVEIEDIRDAEESAVVDKFRELLLSENLLPAKQDDYHTMLRFLKARKFDIEKTKQMWSDMLKWRKEFGTDTIMEDFEFKEQSEVLKYYPQGHHGVDKDGRPVYFERLGLVDSNKMMQVTTLERYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPDFFGGTCTCADQGGCMLSDKGPWKNEEILRKVLNGDHKSSSKSELPLVEEDKTVSEAVPVSEATLVSEEVPVSEEVVPTPNHISHFEETPVHNEVPAIEACKSEDLVPVSNKMVPVSDKMAMKKVEDSERLALSKVGIDTFNNMADAYKRHEKFDNQLFTGVMAFVMGILTMVKMTRNMPKNITNGNFSNPTNFSAEPTYTGQAPASNNEPMPTISAEEFMAVLKRMAELEEKMVTMNIPAYMPPEKEEMLVAAMNRADVLEKELMATKKSLEDSLAQQEELLAYIDKKKKKKWFG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00008 582 Gene3D - 37 110 - -
Accr10g00008 582 PRINTS Cellular retinaldehyde-binding protein signature 283 292 - -
Accr10g00008 582 PRINTS Cellular retinaldehyde-binding protein signature 81 103 - -
Accr10g00008 582 PRINTS Cellular retinaldehyde-binding protein signature 250 269 - -
Accr10g00008 582 MobiDBLite consensus disorder prediction 470 498 - -
Accr10g00008 582 CDD SEC14 122 292 IPR001251 -
Accr10g00008 582 FunFam SEC14 cytosolic factor 111 323 - -
Accr10g00008 582 Pfam CRAL/TRIO, N-terminal domain 77 102 IPR011074 -
Accr10g00008 582 SUPERFAMILY CRAL/TRIO N-terminal domain 52 119 IPR036273 -
Accr10g00008 582 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 576 - -
Accr10g00008 582 Coils Coil 544 568 - -
Accr10g00008 582 Gene3D - 111 322 IPR036865 -
Accr10g00008 582 SMART sec14_4 123 294 IPR001251 -
Accr10g00008 582 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 123 297 IPR001251 -
Accr10g00008 582 Pfam CRAL/TRIO domain 129 291 IPR001251 -
Accr10g00008 582 SUPERFAMILY CRAL/TRIO domain 124 314 IPR036865 -
Accr10g00008 582 SMART CRAL_TRIO_N_2 78 103 IPR011074 -
Accr10g00008 582 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00008 Accr-Chr10 151486 156936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00008 59 288 Acyl Lipid Metabolism Gene Families AT5G47730 29.098 7.31e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00008 K26544 - gmx:100785716 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00008 10 151486 156936 Accr10g00008 10 151486 156936 ECH
Accr1g01763 1 47748461 47755839 Accr10g00008 10 151486 156936 ECH