Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0650 ATGGAACATCACCGATCTTATGGTGTCTCTTCTTCTTCTTCCTCACACCATCTTCAAACAGGGTCACAGTCTGTGTCTTCACAACGTAGCGTAGGTTCAATCCCTTCACTGAACTCACATTCTCATCACCACCATGAAATCCAACCTTCCATCACCACCTACCACCGGTGCCTCACAACTCTCAGAGGCCACACTTCTTCTTCTTCTTCTTCTTCTTACACATCCTGCCTTGCTCTCTCTGCGAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCATGGAATCGCTCTGTTTTGTTCTCTGATGACTCATCAGACCCTGAAAATTGCATCACCACCATAGCACTTTCAGGAAAAGGTGCAGTGAAATCCATAGTGGCTCAATCTGATAAGTTCTTCAGTGCTCATCAAGATCACAAAATCAGAGTATGGAAGATCATCAGCAACAACGAAACAGACCAACAAGAGTACACACAAGTAGCCACACTTCCTACGTTGGTTGATCGAGCTTCCAAGATTCTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGTACGTGGGTTCATCATGTGGACACAGTCTCTGCTCTAGCACTGTCCAAAGACGAGACCTTGCTCTACTCTGTTTCATGGGATAGGACACTGAAAATATGGAGAACCAGAGATTTCAGCTGTTTAGAATCAGTAACCAACGCACACGATGACGCCATAAATGCGGTCGCAGTTTCCAACGATGGATACGTATACACAGGATCGGCAGACAGGAAAATCAAAGTGTGGAAGAAAGGAGAGGGAGAAAAGAAGCATACTTTGGTAGATACATTAGAGAAACACGATTCTGGGGTCAATGCTTTGGCTCTGAGCAATGATGGCCGTGTGTTATATTCTGGTGCGAGTGACAAATCGATACTGGTTTGGGAGAGAGACGATGAAGAAGAAGATGGGAAAATGGGATTGGTGGGGGCATTAAGAGGGCATAGTATGTCTATATTGTGTTTGGCTGTGGTTTGGGATTTGGTGTGTAGTGGTTCTGCCGATAGAACGATTCGGATATGGAGAGGGAACGAGAGAGAGTACTCGTGTTTAGCAGTTTTGGAAGGGCATAGAGGAGCGATTAAGTGTATAACTGCCGCCATTGATCGTTGTGATTCGTCGGAAGCTTCTTTTCTAGTGTACAGTGGCAGTTTGGACTGCGACATTAAGATGTGGCAGGTTGTTGTTCCTGTTTCTTAG 1248 0.4519 MEHHRSYGVSSSSSSHHLQTGSQSVSSQRSVGSIPSLNSHSHHHHEIQPSITTYHRCLTTLRGHTSSSSSSSYTSCLALSAKFLYTGSSDREIRSWNRSVLFSDDSSDPENCITTIALSGKGAVKSIVAQSDKFFSAHQDHKIRVWKIISNNETDQQEYTQVATLPTLVDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTLKIWRTRDFSCLESVTNAHDDAINAVAVSNDGYVYTGSADRKIKVWKKGEGEKKHTLVDTLEKHDSGVNALALSNDGRVLYSGASDKSILVWERDDEEEDGKMGLVGALRGHSMSILCLAVVWDLVCSGSADRTIRIWRGNEREYSCLAVLEGHRGAIKCITAAIDRCDSSEASFLVYSGSLDCDIKMWQVVVPVS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 223 - -
Acco13g0650 415 Gene3D - 181 412 IPR015943 GO:0005515
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 357 - -
Acco13g0650 415 CDD WD40 57 409 - -
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 275 IPR001680 GO:0005515
Acco13g0650 415 SUPERFAMILY WD40 repeat-like 56 410 IPR036322 GO:0005515
Acco13g0650 415 SMART WD40_4 185 224 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 227 266 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 363 409 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 109 147 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 54 97 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 273 312 IPR001680 GO:0005515
Acco13g0650 415 SMART WD40_4 321 358 IPR001680 GO:0005515
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 312 - -
Acco13g0650 415 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 411 IPR045182 -
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 266 - -
Acco13g0650 415 Gene3D - 7 179 IPR015943 GO:0005515
Acco13g0650 415 MobiDBLite consensus disorder prediction 7 38 - -
Acco13g0650 415 MobiDBLite consensus disorder prediction 1 45 - -
Acco13g0650 415 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Acco13g0650 415 Pfam WD domain, G-beta repeat 325 357 IPR001680 GO:0005515
Acco13g0650 415 Pfam WD domain, G-beta repeat 365 408 IPR001680 GO:0005515
Acco13g0650 415 Pfam WD domain, G-beta repeat 193 223 IPR001680 GO:0005515
Acco13g0650 415 Pfam WD domain, G-beta repeat 56 97 IPR001680 GO:0005515
Acco13g0650 415 Pfam WD domain, G-beta repeat 277 311 IPR001680 GO:0005515
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 312 IPR001680 GO:0005515
Acco13g0650 415 FunFam BnaA09g28200D protein 182 270 - -
Acco13g0650 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 357 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0650 Acco-ChrAcco13 4760075 4761322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0650 237 409 Acyl Lipid Metabolism Gene Families AT3G18860 30.556 1.28e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2636 04 43196543 43197757 Acco13g0650 13 4760075 4761322 CCT
Acco04g2636 04 43196543 43197757 Acco13g0650 13 4760075 4761322 ECH
Acco13g0650 13 4760075 4761322 Acco13g0650 13 4760075 4761322 ECH