Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2636 ATGGAGCTCCAGCGATCGTCTTCTTCATCCAACCATGATCAATCCAGCAGACTAGCTTCTCTGTCTTCGCAACGCAGCCTTGTTTCAGTTCCTTCCCTGAACTCTCAGTTTCAGCACCATGCCTCATCAGCCTATTACCAGTGTCTTGCAACTCTCAAAGGTCACACTTCTTACATATCATGTATAGCCCTCGCCGGAAAATTCCTCTACACTGGATCATCTGACAGAGAAATCAGATCCTGGAACCATAATGCTCCTTTCCATCCTGATATATTCGACCAGTCAAATTCTTCAATCACTACTAGCATAATGGTGTCGTCAGGGAAAGGTGCAGTGAAGTCACTGATAGTTCAGTCTGATAAACTATTCAGTGCTCACCAAGACTACAAAATTAGGGTGTGGAAGGTTACAGCCGACGAGCCTGATCGCCGAAAGTATACCCGTTTAGCCACACTTCCGACGTTAGGCGACCGAGCCACGAAGGTGTTGAACCCAAAGAACCATGTTCAGATTAGGAGGCATAAAAAATGTACATGGGTTCACCATGTGGACACAGTCTCTGCTTTGGCCCTGTCCAGGGACGAGACCTTGCTCTACTCTGTTTCATGGGATCGTACAGTTAAAGTGTGGAGAATCAAAGACTTGACTTGTTTAGAATCAGTGAACAACGCACATGATGATGCTATAAACGCCATAGCAGTTTCTGGTGATGGTTATGTGTACACTGGATCAGCAGATAAGAAGATCAAAGTGTGGAAGAAATGTGAAGGAGAGAAGAAACATGGTTTGGTTGATACGTTAGAGAAACACAACTCCGGGATTAATGCTTTGGCTCTGGGCAGTGATGGGTCCCTGTTATATTCAGGTGCTTGTGACAGATCTATACTGGTTTGGGAAAAGGATAATAATGAAGAAGATGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGACACACTAAGTCTATATTATGTTTAGCTATGGTATCTGATTTGGTGTTTAGTGGTTCTGCTGATAAAACGATAAGAATATGGAGAGGCATTCATGGTGATTATTCTTGTTTAGCAGTTTTAGAAGGGCATAATGGTCCTGTTAAGTGCTTAACTGCAGCAGTTGATCGTTGTAATGGTGCTTCTGAAGAATCTTTTCTAGTTTACAGTGGCGGGTTGGACTGTGACATTAAGGTTTGGCAGATCACTGTCCCTCTCGTTCTCTAG 1215 0.4412 MELQRSSSSSNHDQSSRLASLSSQRSLVSVPSLNSQFQHHASSAYYQCLATLKGHTSYISCIALAGKFLYTGSSDREIRSWNHNAPFHPDIFDQSNSSITTSIMVSSGKGAVKSLIVQSDKLFSAHQDYKIRVWKVTADEPDRRKYTRLATLPTLGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRIKDLTCLESVNNAHDDAINAIAVSGDGYVYTGSADKKIKVWKKCEGEKKHGLVDTLEKHNSGINALALGSDGSLLYSGACDRSILVWEKDNNEEDGKMRLVGALRGHTKSILCLAMVSDLVFSGSADKTIRIWRGIHGDYSCLAVLEGHNGPVKCLTAAVDRCNGASEESFLVYSGGLDCDIKVWQITVPLVL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2636 404 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 399 IPR045182 -
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Acco04g2636 404 Gene3D - 147 401 IPR015943 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 213 - -
Acco04g2636 404 CDD WD40 48 397 - -
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 82 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 308 345 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 172 211 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 96 135 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 260 299 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 350 397 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 214 253 IPR001680 GO:0005515
Acco04g2636 404 SMART WD40_4 45 82 IPR001680 GO:0005515
Acco04g2636 404 FunFam BnaA09g28200D protein 169 257 - -
Acco04g2636 404 SUPERFAMILY WD40 repeat-like 46 398 IPR036322 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Acco04g2636 404 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Acco04g2636 404 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Acco04g2636 404 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 82 - -
Acco04g2636 404 Gene3D - 3 146 IPR015943 GO:0005515
Acco04g2636 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Acco04g2636 404 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515
Acco04g2636 404 Pfam WD domain, G-beta repeat 180 210 IPR001680 GO:0005515
Acco04g2636 404 Pfam WD domain, G-beta repeat 311 344 IPR001680 GO:0005515
Acco04g2636 404 Pfam WD domain, G-beta repeat 352 396 IPR001680 GO:0005515
Acco04g2636 404 Pfam WD domain, G-beta repeat 223 253 IPR001680 GO:0005515
Acco04g2636 404 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2636 Acco-ChrAcco04 43196543 43197757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2636 224 404 Miscellaneous Gene Families AT5G08390 24.339 5.29e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2636 04 43196543 43197757 Acco13g0650 13 4760075 4761322 CCT
Acco04g2636 04 43196543 43197757 Acco13g0650 13 4760075 4761322 ECH
Acco04g2636 04 43196543 43197757 Acco04g2636 04 43196543 43197757 ECH