Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0581 ATGAAGGAGACAATAAGGTACTTAGCAGGAATTGCTGGCCCAAGTGGTTTTGGCTCTAATTCCACAGCTGAGCAAGTTACTCAACACTTCTCTTCTTCAATGCTTCCTTCTCATCTCACTGCTCTCGTTACTGGGGCGACTTCTGGGATTGGAGCTGAAACGGCGAGAGTGTTGGCGAAGAGAGGAGTAAGAGTAGTGATTGGTGCGAGGAACATGAAGAAGGCAAGGGAAGTGAGAGAGAATATCCTCAAAGAGAGTCCAAATGCTGAGGTTGTATTGCTTGAGATTGATCTCAGCTCTTTTGCTTCTGTTCAGAGATTTTGTTCTGAGTTCTTGGCCCTACAACTTCCTCTCAACATTCTCATAAACAATGCTGGGATATATTCTCAGGAGTTGGAGTTCTCGGAAGAGAAAATAGAGATGACATTTGCAACAAATTACCTAGGACATTTTTTGTTAACGGAAATGCTATTGGAGATAATGATAGAAACAGCAGATAAGACGGCCATTGAAGGAAGAATAATAAACGTGTCTTCAATGATCCATAGCTGGGTTAAAAGAGAGACTTTTCAATTCAAGGACATGATTAAAGGAAGAAACTATAATGGCACGCGTGCGTATGCCCAGTCAAAACTGTCCGGTATTTTGCATGCCAAGGAAATGGCCAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTATGAAAGCTCACAAGAGTCTCATAACAGATTCTTTCTTCTTCCTCGCATCCAAGTTACTCAAATCCACTTCTCAGGGAGCAGCAACGACATGTTATGTAGCGTTGAGCCCAAAAACGGAAGGAGTGAGTGGGAAATACTTCTTAGACTGCAATGAGAGTAACTGTTCAAGTTTAGCCAATGACGAATCTGAAGCTCTCAAGCTATGGAACAGCACACGTTCCCTTCTTCACAAACGATTACGACGTTGTAAACCCTCTGCTGTGTGA 1005 0.4279 MKETIRYLAGIAGPSGFGSNSTAEQVTQHFSSSMLPSHLTALVTGATSGIGAETARVLAKRGVRVVIGARNMKKAREVRENILKESPNAEVVLLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIYSQELEFSEEKIEMTFATNYLGHFLLTEMLLEIMIETADKTAIEGRIINVSSMIHSWVKRETFQFKDMIKGRNYNGTRAYAQSKLSGILHAKEMAKQLKARNARVTINVVHPGIVKTAIMKAHKSLITDSFFFLASKLLKSTSQGAATTCYVALSPKTEGVSGKYFLDCNESNCSSLANDESEALKLWNSTRSLLHKRLRRCKPSAV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0581 334 Pfam short chain dehydrogenase 40 181 IPR002347 -
Acco13g0581 334 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Acco13g0581 334 PRINTS Glucose/ribitol dehydrogenase family signature 116 127 IPR002347 -
Acco13g0581 334 PRINTS Glucose/ribitol dehydrogenase family signature 40 57 IPR002347 -
Acco13g0581 334 PRINTS Glucose/ribitol dehydrogenase family signature 166 182 IPR002347 -
Acco13g0581 334 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Acco13g0581 334 CDD retinol-DH_like_SDR_c_like 40 315 - -
Acco13g0581 334 Gene3D - 37 327 - -
Acco13g0581 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 299 IPR036291 -
Acco13g0581 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 180 IPR002347 -
Acco13g0581 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 127 IPR002347 -
Acco13g0581 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Acco13g0581 334 PANTHER RETINOL DEHYDROGENASE 14 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0581 Acco-ChrAcco13 4206943 4209633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0581 19 249 Acyl Lipid Metabolism Gene Families AT1G63380 29.412 5.23e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2551 04 42404815 42408372 Acco13g0581 13 4206943 4209633 CCT
Acco13g0581 13 4206943 4209633 Acco13g0581 13 4206943 4209633 ECH