Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2551 ATGTGTGCGTGTGTGAGTGTATGGTGTTATAAATTAAGTTTGAATTGTGAAATGGTGTTCCTTTGTGGTGGTAAAAGAGTGAAAGCGAGCAACATGAAGGCGACACTGAGATACTTAGCAGGAATGGCTGGGCCTAGTGGTTATGGCTCTAATTCAACAGCCGAGCAAGTCACTGAAGATTGCTCTAATTGCTCTCTCTTCTCTCATCTAACTGCTGTCATCACAGGTGGGACTTCTGGGATTGGAGCTGAAACAGCAAGAGTATTGGCTAAGAGAGGAGTGAGAGTAGTGATTGGAGCGAGGGACTTGAAGAAGGCGAGAGAAGTAATACACAATATACAGAAAGAAACTCCAAAGGCAGAGATTATAGTGTTGGAAATCGATCTCAGTTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTTTTGGCTCTACAACTTCCTCTCAATATCCTCATAAACAATGCTGGAATATTCTCTCAGAACTTGGAATTCTCCGAAGAGAAAATTGAGATGACGTTTGCCACCAACTACTTGGGACATTTTTTGTTGACAGAAATGCTGATAGAGAAAATGATAGAAACAGCAGAGAAGAGTGGGATTGAAGGAAGGATCATAAATGTGTCTTCTGTGATCCATAGCTGGGTCAAGAGAGATGCTTTTCATTTCCACCACTTGCTTAATGGAACAAAATATAATGGTACACGTGCATATGCCCAATCAAAATTGGTCAATATTTTGCATGCCAAGGAATTAGCTAGAAAACTTAAGGCAAGGAATGCCAAAGTAACAGTAAATGCAGTTCATCCAGGGATTGTGAAGACAGGAATTATCAGAGCTCATAAAGGCCTCATAACAGATTCCTTGTTCTTCATTGCGTCCAAGTTGCTCAAATCAACATCTCAGGGAGCAGCAACAACGTGTTATGTTGCAGTGAGTGCCAAAACACAAGGGCTAAGCGGGAAATACTTTGCAGATTGTAATGAGAGTAACTGCTCAAGTTTAGCAAACGACGAATTTGAAGCTCAGAAGCTATGGAGCAATACTCAAGCTTTGCTTCATAAACGACTGCGTCAAGCCTCCACTTAA 1089 0.4123 MCACVSVWCYKLSLNCEMVFLCGGKRVKASNMKATLRYLAGMAGPSGYGSNSTAEQVTEDCSNCSLFSHLTAVITGGTSGIGAETARVLAKRGVRVVIGARDLKKAREVIHNIQKETPKAEIIVLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEMLIEKMIETAEKSGIEGRIINVSSVIHSWVKRDAFHFHHLLNGTKYNGTRAYAQSKLVNILHAKELARKLKARNAKVTVNAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGAATTCYVAVSAKTQGLSGKYFADCNESNCSSLANDEFEAQKLWSNTQALLHKRLRQAST 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2551 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 71 330 IPR036291 -
Acco04g2551 362 Pfam short chain dehydrogenase 71 212 IPR002347 -
Acco04g2551 362 PRINTS Glucose/ribitol dehydrogenase family signature 261 278 IPR002347 -
Acco04g2551 362 PRINTS Glucose/ribitol dehydrogenase family signature 147 158 IPR002347 -
Acco04g2551 362 PRINTS Glucose/ribitol dehydrogenase family signature 197 213 IPR002347 -
Acco04g2551 362 PRINTS Glucose/ribitol dehydrogenase family signature 238 257 IPR002347 -
Acco04g2551 362 PRINTS Glucose/ribitol dehydrogenase family signature 71 88 IPR002347 -
Acco04g2551 362 Gene3D - 59 358 - -
Acco04g2551 362 PANTHER RETINOL DEHYDROGENASE 45 353 - -
Acco04g2551 362 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 238 257 IPR002347 -
Acco04g2551 362 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 211 IPR002347 -
Acco04g2551 362 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 158 IPR002347 -
Acco04g2551 362 CDD retinol-DH_like_SDR_c_like 71 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2551 Acco-ChrAcco04 42404815 42408372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2551 50 280 Acyl Lipid Metabolism Gene Families AT1G63380 27.119 2.61e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2551 04 42404815 42408372 Acco13g0581 13 4206943 4209633 CCT
Acco04g2551 04 42404815 42408372 Acco04g2551 04 42404815 42408372 ECH